Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00304 * 2 1 4 4 C 1.50696 * 109.47265 * 66.04094 * 3 2 1 5 5 H 1.07997 * 120.00012 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 C 1.46901 * 110.99971 * 236.04280 * 2 1 3 13 13 H 1.08996 * 109.97002 * 64.13507 * 12 2 1 14 14 C 1.54278 * 109.98381 * 302.82428 * 12 2 1 15 15 C 1.54978 * 103.75418 * 217.52907 * 14 12 2 16 16 C 1.54898 * 102.33219 * 37.08494 * 15 14 12 17 17 C 1.51443 * 109.98206 * 185.41026 * 12 2 1 18 18 O 1.20763 * 126.34618 * 299.00660 * 17 12 2 19 19 H 1.09004 * 109.47172 * 60.00066 * 1 2 3 20 20 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47117 * 300.00353 * 1 2 3 22 22 H 1.09008 * 109.46741 * 306.04325 * 3 2 1 23 23 H 1.08991 * 109.47293 * 186.04624 * 3 2 1 24 24 H 0.97000 * 119.99838 * 359.97438 * 7 6 4 25 25 H 1.09005 * 110.57350 * 336.09350 * 14 12 2 26 26 H 1.09002 * 110.57181 * 98.95741 * 14 12 2 27 27 H 1.09002 * 110.83252 * 278.87949 * 15 14 12 28 28 H 1.09003 * 111.01265 * 155.37204 * 15 14 12 29 29 H 1.09002 * 110.44006 * 203.63764 * 16 15 14 30 30 H 1.08998 * 110.54747 * 81.16603 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0277 3.3492 1.5287 7 7 2.7130 4.0015 0.6152 8 14 1.5839 4.1866 3.1384 9 1 2.6608 3.9495 4.1331 10 1 1.4322 5.6464 2.9117 11 1 0.3060 3.6297 3.6503 12 6 1.9954 -0.7661 -1.1376 13 1 1.7116 -0.2850 -2.0735 14 6 1.4506 -2.2089 -1.0989 15 6 2.6484 -3.0680 -1.5775 16 6 3.8557 -2.3371 -0.9391 17 6 3.5037 -0.8636 -1.0422 18 8 4.2823 0.0595 -1.0469 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.5611 1.9273 -0.8310 23 1 3.0796 1.3444 -0.1082 24 1 2.9438 3.5665 -0.2205 25 1 1.1642 -2.4832 -0.0835 26 1 0.6055 -2.3176 -1.7787 27 1 2.7213 -3.0599 -2.6650 28 1 2.5714 -4.0889 -1.2034 29 1 4.7679 -2.5505 -1.4963 30 1 3.9712 -2.6288 0.1047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -40.458213 kcal Electronic energy + Delta-G solvation = -12853.582870 eV Core-core repulsion = 10648.645980 eV Total energy + Delta-G solvation = -2204.936890 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.68339 -36.56939 -34.92785 -32.49088 -28.10889 -27.05337 -26.37507 -23.87618 -21.31356 -20.60045 -18.63216 -16.67815 -16.33168 -15.78583 -14.64913 -14.06740 -13.81867 -13.60000 -13.24425 -12.90931 -12.49547 -12.03374 -11.68911 -11.45156 -11.25926 -10.96812 -10.84484 -10.70864 -10.56713 -10.33838 -10.04870 -9.00834 -8.54227 -8.25659 -7.41924 -6.28995 -3.97003 2.32877 3.47550 3.51724 3.67131 4.38176 4.54752 4.66931 4.83843 5.00852 5.16062 5.47260 5.47631 5.57314 5.65445 5.80826 5.85941 6.00081 6.04404 6.09996 6.22329 6.33819 6.64522 7.09967 7.16222 7.76847 7.90099 8.03445 8.36268 8.63143 8.94455 9.73859 11.10669 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052594 B = 0.009963 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.249888 B = 2809.668410 C = 3099.874662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.518 5.518 3 C 0.162 3.838 4 C -0.589 4.589 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.914 5.914 8 Si 1.076 2.924 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.289 1.289 12 C 0.017 3.983 13 H 0.057 0.943 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.177 4.177 17 C 0.375 3.625 18 O -0.428 6.428 19 H 0.012 0.988 20 H 0.051 0.949 21 H 0.078 0.922 22 H -0.022 1.022 23 H 0.049 0.951 24 H 0.269 0.731 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 -13.525 -3.694 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.244 5.244 3 C 0.037 3.963 4 C -0.627 4.627 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.550 5.550 8 Si 0.904 3.096 9 H -0.215 1.215 10 H -0.211 1.211 11 H -0.215 1.215 12 C -0.093 4.093 13 H 0.075 0.925 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.215 4.215 17 C 0.248 3.752 18 O -0.298 6.298 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.096 0.904 22 H -0.005 1.005 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.726 -11.816 -2.430 12.186 hybrid contribution -0.505 -1.056 -1.656 2.028 sum -2.231 -12.872 -4.087 13.688 Atomic orbital electron populations 1.22266 0.88020 0.99570 1.01166 1.62270 1.07433 1.17694 1.37004 1.20235 0.97048 0.82146 0.96867 1.21949 1.38916 0.99751 1.02125 0.92579 1.25850 0.94561 0.94746 1.03978 1.70720 1.36297 1.40003 1.07976 0.83451 0.75923 0.75829 0.74357 1.21469 1.21101 1.21518 1.22832 0.94866 0.96099 0.95488 0.92517 1.22397 0.97254 0.92853 1.02572 1.22376 0.94128 0.98851 1.00194 1.22835 0.99766 0.95304 1.03591 1.24788 0.90792 0.90285 0.69335 1.90414 1.57999 1.45669 1.35749 0.96952 0.93055 0.90377 1.00479 0.93299 0.92082 0.89645 0.91303 0.91212 0.90495 0.89617 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.10 60.06 0.55 1.29 16 2 N -0.52 -11.57 4.57 -236.48 -1.08 -12.65 16 3 C 0.16 4.49 3.87 -4.98 -0.02 4.47 16 4 C -0.59 -17.50 8.51 -34.44 -0.29 -17.80 16 5 H 0.06 1.64 7.10 -52.49 -0.37 1.27 16 6 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 7 N -0.91 -29.38 13.65 55.43 0.76 -28.62 16 8 Si 1.08 26.32 29.90 -169.99 -5.08 21.24 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.02 0.31 2.61 -67.83 -0.18 0.13 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.11 -1.48 5.16 -25.02 -0.13 -1.60 16 15 C -0.12 -1.25 6.95 -24.69 -0.17 -1.42 16 16 C -0.18 -2.33 6.72 -26.32 -0.18 -2.51 16 17 C 0.38 7.08 7.13 -28.10 -0.20 6.88 16 18 O -0.43 -10.02 15.57 6.00 0.09 -9.93 16 19 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 20 H 0.05 0.81 6.60 -51.93 -0.34 0.46 16 21 H 0.08 1.65 6.86 -51.93 -0.36 1.30 16 22 H -0.02 -0.66 7.99 -51.92 -0.41 -1.08 16 23 H 0.05 1.47 5.11 -51.93 -0.27 1.20 16 24 H 0.27 8.77 7.22 -40.82 -0.29 8.48 16 25 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 245.96 15.07 3.71 3.71 Total: -1.00 -34.05 245.96 -6.52 -40.57 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.19 Total: -4.04 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.72 Total: -10.28 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.32 Total: -41.27 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.05 -6.52 -40.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds