Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00304 * 2 1 4 4 C 1.50696 * 109.47265 * 66.04094 * 3 2 1 5 5 H 1.07997 * 120.00012 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 C 1.46901 * 110.99971 * 236.04280 * 2 1 3 13 13 H 1.08996 * 109.97002 * 64.13507 * 12 2 1 14 14 C 1.54278 * 109.98381 * 302.82428 * 12 2 1 15 15 C 1.54978 * 103.75418 * 217.52907 * 14 12 2 16 16 C 1.54898 * 102.33219 * 37.08494 * 15 14 12 17 17 C 1.51443 * 109.98206 * 185.41026 * 12 2 1 18 18 O 1.20763 * 126.34618 * 299.00660 * 17 12 2 19 19 H 1.09004 * 109.47172 * 60.00066 * 1 2 3 20 20 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47117 * 300.00353 * 1 2 3 22 22 H 1.09008 * 109.46741 * 306.04325 * 3 2 1 23 23 H 1.08991 * 109.47293 * 186.04624 * 3 2 1 24 24 H 0.97000 * 119.99838 * 359.97438 * 7 6 4 25 25 H 1.09005 * 110.57350 * 336.09350 * 14 12 2 26 26 H 1.09002 * 110.57181 * 98.95741 * 14 12 2 27 27 H 1.09002 * 110.83252 * 278.87949 * 15 14 12 28 28 H 1.09003 * 111.01265 * 155.37204 * 15 14 12 29 29 H 1.09002 * 110.44006 * 203.63764 * 16 15 14 30 30 H 1.08998 * 110.54747 * 81.16603 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0277 3.3492 1.5287 7 7 2.7130 4.0015 0.6152 8 14 1.5839 4.1866 3.1384 9 1 2.6608 3.9495 4.1331 10 1 1.4322 5.6464 2.9117 11 1 0.3060 3.6297 3.6503 12 6 1.9954 -0.7661 -1.1376 13 1 1.7116 -0.2850 -2.0735 14 6 1.4506 -2.2089 -1.0989 15 6 2.6484 -3.0680 -1.5775 16 6 3.8557 -2.3371 -0.9391 17 6 3.5037 -0.8636 -1.0422 18 8 4.2823 0.0595 -1.0469 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.5611 1.9273 -0.8310 23 1 3.0796 1.3444 -0.1082 24 1 2.9438 3.5665 -0.2205 25 1 1.1642 -2.4832 -0.0835 26 1 0.6055 -2.3176 -1.7787 27 1 2.7213 -3.0599 -2.6650 28 1 2.5714 -4.0889 -1.2034 29 1 4.7679 -2.5505 -1.4963 30 1 3.9712 -2.6288 0.1047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -65.572257 kcal Electronic energy + Delta-G solvation = -12854.671896 eV Core-core repulsion = 10648.645980 eV Total energy + Delta-G solvation = -2206.025917 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17062 -38.22286 -36.47081 -34.61825 -29.65861 -28.65017 -27.92997 -25.79494 -23.26089 -21.71986 -20.12590 -18.91169 -17.75195 -17.29962 -16.26347 -15.68552 -15.45169 -15.31652 -14.92704 -14.58836 -13.85409 -13.57682 -13.53165 -13.08689 -12.87873 -12.61112 -12.39086 -12.19101 -11.95495 -11.92064 -11.61969 -10.83633 -10.65238 -10.32183 -9.27202 -8.73401 -6.42957 0.84071 1.49116 1.60144 1.77630 2.53550 3.06047 3.12334 3.23559 3.57635 3.82768 4.14900 4.23219 4.30128 4.43581 4.55378 4.64957 4.83533 4.83970 4.92574 4.96325 5.07669 5.14528 5.15677 5.36799 5.71856 5.90915 6.26400 6.33648 6.48986 6.55009 7.39519 8.65064 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052594 B = 0.009963 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.249888 B = 2809.668410 C = 3099.874662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.526 5.526 3 C 0.174 3.826 4 C -0.599 4.599 5 H 0.060 0.940 6 C -0.045 4.045 7 N -0.938 5.938 8 Si 1.129 2.871 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.003 3.997 13 H 0.045 0.955 14 C -0.102 4.102 15 C -0.102 4.102 16 C -0.167 4.167 17 C 0.358 3.642 18 O -0.490 6.490 19 H 0.006 0.994 20 H 0.100 0.900 21 H 0.057 0.943 22 H -0.057 1.057 23 H 0.021 0.979 24 H 0.249 0.751 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -16.214 -2.915 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.251 5.251 3 C 0.047 3.953 4 C -0.637 4.637 5 H 0.078 0.922 6 C -0.241 4.241 7 N -0.576 5.576 8 Si 0.948 3.052 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.187 1.187 12 C -0.106 4.106 13 H 0.062 0.938 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.204 4.204 17 C 0.236 3.764 18 O -0.365 6.365 19 H 0.025 0.975 20 H 0.118 0.882 21 H 0.076 0.924 22 H -0.039 1.039 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.892 -14.568 -1.670 14.945 hybrid contribution -0.167 -0.284 -1.970 1.997 sum -3.058 -14.851 -3.640 15.594 Atomic orbital electron populations 1.22313 0.86257 1.02293 0.99898 1.62164 1.09084 1.14369 1.39506 1.19881 0.95331 0.85151 0.94910 1.22314 1.38396 1.00207 1.02777 0.92195 1.27641 0.93563 0.96093 1.06851 1.70880 1.38408 1.40267 1.08036 0.82819 0.77191 0.74958 0.70194 1.19902 1.20728 1.18714 1.23219 0.95189 0.98843 0.93349 0.93760 1.22421 0.99038 0.88786 1.03733 1.22433 0.90759 0.99647 1.01111 1.22879 1.02088 0.90567 1.04910 1.25817 0.90939 0.92637 0.67050 1.90384 1.59313 1.48258 1.38496 0.97492 0.88189 0.92391 1.03942 0.96146 0.94218 0.89248 0.88791 0.89624 0.86716 0.87732 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.10 127.69 1.16 2.69 16 2 N -0.53 -23.66 4.57 -902.08 -4.12 -27.79 16 3 C 0.17 10.12 3.87 85.56 0.33 10.45 16 4 C -0.60 -36.52 8.51 25.60 0.22 -36.30 16 5 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 6 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 7 N -0.94 -62.69 13.65 21.45 0.29 -62.39 16 8 Si 1.13 52.88 29.90 68.60 2.05 54.93 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 12 C 0.00 0.12 2.61 44.84 0.12 0.24 16 13 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.10 -2.27 5.16 31.70 0.16 -2.10 16 15 C -0.10 -1.66 6.95 31.92 0.22 -1.44 16 16 C -0.17 -3.93 6.72 30.86 0.21 -3.72 16 17 C 0.36 13.65 7.13 29.71 0.21 13.87 16 18 O -0.49 -24.28 15.57 -1.46 -0.02 -24.30 16 19 H 0.01 0.25 8.14 -2.38 -0.02 0.24 16 20 H 0.10 2.83 6.60 -2.39 -0.02 2.81 16 21 H 0.06 2.43 6.86 -2.39 -0.02 2.41 16 22 H -0.06 -3.60 7.99 -2.38 -0.02 -3.62 16 23 H 0.02 1.32 5.11 -2.39 -0.01 1.31 16 24 H 0.25 17.27 7.22 -92.71 -0.67 16.60 16 25 H 0.09 1.97 7.55 -2.38 -0.02 1.95 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -79.31 245.96 2.51 -76.80 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.21 Total: 1.40 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.09 Total: -18.65 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.83 Total: -90.18 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.02 Total: -24.30 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.05 Total: 54.93 kcal Total: -79.31 2.51 -76.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.228 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds