Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20761 * 119.99772 * 2 1 4 4 C 1.50702 * 119.99883 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.46789 * 174.62146 * 4 2 1 6 6 C 1.46904 * 110.99728 * 289.42570 * 5 4 2 7 7 C 1.50700 * 109.47006 * 170.00107 * 6 5 4 8 8 H 1.08005 * 119.99850 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00526 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99533 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00462 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47042 * 89.99994 * 11 9 7 13 13 H 1.48497 * 109.47072 * 210.00080 * 11 9 7 14 14 H 1.48501 * 109.46780 * 329.99903 * 11 9 7 15 15 C 1.46896 * 110.99758 * 165.47736 * 5 4 2 16 16 C 1.53003 * 117.50014 * 9.86100 * 15 5 4 17 17 C 1.53000 * 117.50081 * 301.23816 * 15 5 4 18 18 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47032 * 299.99740 * 1 2 3 20 20 H 1.09002 * 109.47125 * 59.99977 * 1 2 3 21 21 H 1.08995 * 109.46877 * 54.62248 * 4 2 1 22 22 H 1.08991 * 109.46846 * 294.62115 * 4 2 1 23 23 H 1.08996 * 109.47730 * 290.00548 * 6 5 4 24 24 H 1.08998 * 109.46769 * 50.00630 * 6 5 4 25 25 H 0.97002 * 119.99881 * 179.97438 * 10 9 7 26 26 H 1.09001 * 115.55013 * 155.56793 * 15 5 4 27 27 H 1.08999 * 117.49988 * 359.97438 * 16 15 5 28 28 H 1.08994 * 117.50185 * 145.02309 * 16 15 5 29 29 H 1.09002 * 117.50038 * 214.98416 * 17 15 5 30 30 H 1.09000 * 117.49515 * 359.97171 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.6995 -1.0396 -0.1303 6 6 4.0262 -0.5564 -1.4786 7 6 5.4504 -0.0646 -1.5045 8 1 6.0528 -0.1072 -0.6090 9 6 5.9846 0.4397 -2.6712 10 7 5.2512 0.4911 -3.7617 11 14 7.7503 1.0487 -2.7035 12 1 8.6539 -0.0723 -3.0669 13 1 7.8809 2.1351 -3.7074 14 1 8.1195 1.5674 -1.3619 15 6 4.4874 -2.2328 0.2065 16 6 3.7310 -3.5501 0.3904 17 6 4.3103 -2.8243 1.6064 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.9269 -1.9168 -0.8387 22 1 2.0714 -1.8342 0.9333 23 1 3.9097 -1.3701 -2.1944 24 1 3.3550 0.2602 -1.7443 25 1 5.6269 0.8462 -4.5825 26 1 5.4814 -2.2807 -0.2381 27 1 2.6488 -3.5313 0.2619 28 1 4.2274 -4.4649 0.0667 29 1 5.1879 -3.2616 2.0827 30 1 3.6096 -2.3278 2.2776 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050146418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -1.150072 kcal Electronic energy + Delta-G solvation = -12695.040094 eV Core-core repulsion = 10491.807733 eV Total energy + Delta-G solvation = -2203.232361 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20363 -37.45689 -33.51498 -32.06842 -30.37432 -27.58323 -25.04815 -22.31579 -21.92524 -20.07900 -18.54067 -16.51396 -15.97512 -15.22477 -14.79573 -14.31011 -14.26966 -13.89277 -12.96716 -12.46510 -12.09061 -12.00810 -11.86634 -11.49994 -11.17402 -11.03005 -10.73143 -10.64009 -10.15641 -9.96106 -9.60653 -9.21280 -8.89139 -8.36037 -7.15429 -5.96947 -3.96804 2.55988 3.35890 3.42001 3.47761 4.24633 4.43017 4.50626 5.02352 5.31041 5.36009 5.42269 5.48090 5.49648 5.62989 5.71938 5.75913 5.93870 6.00166 6.20307 6.26116 6.49553 6.69495 7.23425 7.32435 7.83444 8.10475 8.12590 8.23382 8.56788 9.09547 9.66114 11.14507 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.011908 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.290564 B = 2350.814608 C = 2961.165995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.343 3.657 3 O -0.423 6.423 4 C 0.000 4.000 5 N -0.494 5.494 6 C 0.194 3.806 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.055 3.945 16 C -0.234 4.234 17 C -0.188 4.188 18 H 0.075 0.925 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.059 0.941 22 H 0.095 0.905 23 H -0.009 1.009 24 H 0.039 0.961 25 H 0.260 0.740 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -6.243 7.059 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.215 3.785 3 O -0.293 6.293 4 C -0.129 4.129 5 N -0.216 5.216 6 C 0.069 3.931 7 C -0.540 4.540 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.055 4.055 16 C -0.273 4.273 17 C -0.226 4.226 18 H 0.094 0.906 19 H 0.104 0.896 20 H 0.106 0.894 21 H 0.077 0.923 22 H 0.112 0.888 23 H 0.009 0.991 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.774 -5.199 7.181 11.157 hybrid contribution 0.572 -0.466 -0.687 1.008 sum -6.203 -5.665 6.494 10.618 Atomic orbital electron populations 1.22235 0.95379 1.03860 1.04259 1.24572 0.90942 0.90838 0.72164 1.90462 1.71495 1.34556 1.32805 1.22620 0.92098 0.96302 1.01905 1.61848 1.00459 1.26841 1.32462 1.19817 0.97783 0.94540 0.80931 1.21118 0.96625 1.40379 0.95901 0.91824 1.24970 0.98087 0.96040 0.95543 1.69959 1.36437 1.46835 1.00782 0.86494 0.84638 0.78411 0.77874 1.20809 1.21283 1.19734 1.22706 0.99143 0.86427 0.97217 1.23542 1.00368 0.98511 1.04893 1.23018 1.03015 1.04507 0.92049 0.90614 0.89620 0.89414 0.92278 0.88758 0.99098 0.94275 0.93011 0.85427 0.89126 0.89489 0.89184 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 10.33 36.01 0.37 -2.04 16 2 C 0.34 6.12 6.78 -29.03 -0.20 5.93 16 3 O -0.42 -9.78 15.81 6.00 0.09 -9.68 16 4 C 0.00 -0.01 3.92 -4.97 -0.02 -0.03 16 5 N -0.49 -11.04 4.33 -229.52 -0.99 -12.03 16 6 C 0.19 5.23 4.36 -4.97 -0.02 5.21 16 7 C -0.50 -14.64 8.29 -34.44 -0.29 -14.92 16 8 H 0.06 1.85 7.54 -52.48 -0.40 1.45 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 11 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.06 1.08 5.74 -67.71 -0.39 0.69 16 16 C -0.23 -3.63 9.56 -26.73 -0.26 -3.88 16 17 C -0.19 -2.94 9.93 -26.73 -0.27 -3.21 16 18 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 19 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 20 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 22 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 23 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 24 H 0.04 1.16 6.40 -51.93 -0.33 0.83 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.13 2.74 7.18 -51.93 -0.37 2.36 16 27 H 0.09 1.29 5.99 -51.93 -0.31 0.98 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.33 7.47 -51.93 -0.39 0.94 16 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -33.03 253.82 -6.69 -39.71 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.17 Total: -1.63 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.16 Total: -10.75 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.26 Total: -38.82 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.03 -6.69 -39.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.562 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds