Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20761 * 119.99772 * 2 1 4 4 C 1.50702 * 119.99883 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.46789 * 174.62146 * 4 2 1 6 6 C 1.46904 * 110.99728 * 289.42570 * 5 4 2 7 7 C 1.50700 * 109.47006 * 170.00107 * 6 5 4 8 8 H 1.08005 * 119.99850 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00526 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99533 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00462 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47042 * 89.99994 * 11 9 7 13 13 H 1.48497 * 109.47072 * 210.00080 * 11 9 7 14 14 H 1.48501 * 109.46780 * 329.99903 * 11 9 7 15 15 C 1.46896 * 110.99758 * 165.47736 * 5 4 2 16 16 C 1.53003 * 117.50014 * 9.86100 * 15 5 4 17 17 C 1.53000 * 117.50081 * 301.23816 * 15 5 4 18 18 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47032 * 299.99740 * 1 2 3 20 20 H 1.09002 * 109.47125 * 59.99977 * 1 2 3 21 21 H 1.08995 * 109.46877 * 54.62248 * 4 2 1 22 22 H 1.08991 * 109.46846 * 294.62115 * 4 2 1 23 23 H 1.08996 * 109.47730 * 290.00548 * 6 5 4 24 24 H 1.08998 * 109.46769 * 50.00630 * 6 5 4 25 25 H 0.97002 * 119.99881 * 179.97438 * 10 9 7 26 26 H 1.09001 * 115.55013 * 155.56793 * 15 5 4 27 27 H 1.08999 * 117.49988 * 359.97438 * 16 15 5 28 28 H 1.08994 * 117.50185 * 145.02309 * 16 15 5 29 29 H 1.09002 * 117.50038 * 214.98416 * 17 15 5 30 30 H 1.09000 * 117.49515 * 359.97171 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.6995 -1.0396 -0.1303 6 6 4.0262 -0.5564 -1.4786 7 6 5.4504 -0.0646 -1.5045 8 1 6.0528 -0.1072 -0.6090 9 6 5.9846 0.4397 -2.6712 10 7 5.2512 0.4911 -3.7617 11 14 7.7503 1.0487 -2.7035 12 1 8.6539 -0.0723 -3.0669 13 1 7.8809 2.1351 -3.7074 14 1 8.1195 1.5674 -1.3619 15 6 4.4874 -2.2328 0.2065 16 6 3.7310 -3.5501 0.3904 17 6 4.3103 -2.8243 1.6064 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.9269 -1.9168 -0.8387 22 1 2.0714 -1.8342 0.9333 23 1 3.9097 -1.3701 -2.1944 24 1 3.3550 0.2602 -1.7443 25 1 5.6269 0.8462 -4.5825 26 1 5.4814 -2.2807 -0.2381 27 1 2.6488 -3.5313 0.2619 28 1 4.2274 -4.4649 0.0667 29 1 5.1879 -3.2616 2.0827 30 1 3.6096 -2.3278 2.2776 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050146418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -24.626029 kcal Electronic energy + Delta-G solvation = -12696.058088 eV Core-core repulsion = 10491.807733 eV Total energy + Delta-G solvation = -2204.250355 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.71016 -38.94736 -35.43677 -33.93179 -31.72755 -29.34168 -26.75554 -24.30548 -23.18713 -21.54457 -20.05163 -18.54321 -17.61225 -16.84064 -16.34726 -16.18317 -15.64168 -15.31473 -14.61408 -14.22280 -13.93873 -13.37899 -13.10462 -12.92679 -12.86276 -12.63340 -12.48254 -12.25268 -12.02519 -11.68925 -11.34494 -11.06248 -10.62280 -10.35097 -8.80691 -8.21810 -6.30661 1.17989 1.36429 1.39468 1.51056 2.38353 2.87722 3.09237 3.12895 3.56990 3.98518 4.16658 4.25380 4.27649 4.34493 4.52663 4.71080 4.75445 4.80414 5.02902 5.03905 5.17229 5.21512 5.26778 5.30652 5.63712 6.05381 6.35460 6.54424 6.83100 6.87288 7.37667 8.89643 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.011908 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.290564 B = 2350.814608 C = 2961.165995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.339 3.661 3 O -0.490 6.490 4 C -0.008 4.008 5 N -0.512 5.512 6 C 0.215 3.785 7 C -0.520 4.520 8 H 0.057 0.943 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.969 3.031 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.004 3.996 16 C -0.207 4.207 17 C -0.161 4.161 18 H 0.112 0.888 19 H 0.105 0.895 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.132 0.868 23 H -0.036 1.036 24 H 0.004 0.996 25 H 0.264 0.736 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -7.605 8.410 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.216 3.784 3 O -0.365 6.365 4 C -0.136 4.136 5 N -0.234 5.234 6 C 0.089 3.911 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.194 1.194 15 C -0.105 4.105 16 C -0.246 4.246 17 C -0.199 4.199 18 H 0.130 0.870 19 H 0.124 0.876 20 H 0.109 0.891 21 H 0.089 0.911 22 H 0.150 0.850 23 H -0.018 1.018 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.361 -6.605 8.555 13.076 hybrid contribution 0.699 -0.120 -1.073 1.287 sum -6.661 -6.724 7.481 12.065 Atomic orbital electron populations 1.22212 0.90351 1.06659 1.05231 1.25461 0.93717 0.89785 0.69448 1.90447 1.73359 1.36457 1.36218 1.22888 0.89489 0.97132 1.04095 1.61711 1.03496 1.29174 1.29033 1.19317 0.96027 0.92437 0.83297 1.21432 0.97889 1.40663 0.95877 0.92491 1.25919 1.02844 0.96032 0.95046 1.70084 1.38519 1.47604 1.01423 0.85383 0.79051 0.78220 0.77976 1.19233 1.20608 1.19366 1.22602 0.98539 0.88093 1.01293 1.23620 1.01117 0.96494 1.03388 1.23104 1.03710 1.02513 0.90564 0.86960 0.87637 0.89142 0.91066 0.84999 1.01828 0.97831 0.92719 0.88650 0.87268 0.88090 0.87406 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 10.33 71.24 0.74 -3.28 16 2 C 0.34 11.94 6.78 29.10 0.20 12.14 16 3 O -0.49 -23.41 15.81 -1.45 -0.02 -23.44 16 4 C -0.01 -0.27 3.92 85.56 0.34 0.06 16 5 N -0.51 -23.21 4.33 -880.07 -3.81 -27.03 16 6 C 0.22 12.19 4.36 85.56 0.37 12.56 16 7 C -0.52 -31.59 8.29 25.60 0.21 -31.37 16 8 H 0.06 3.44 7.54 -2.91 -0.02 3.41 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 11 Si 0.97 46.72 29.54 68.60 2.03 48.75 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.00 0.16 5.74 44.92 0.26 0.42 16 16 C -0.21 -5.83 9.56 30.60 0.29 -5.53 16 17 C -0.16 -4.58 9.93 30.59 0.30 -4.28 16 18 H 0.11 1.59 8.00 -2.39 -0.02 1.57 16 19 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 20 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 21 H 0.07 2.26 7.72 -2.39 -0.02 2.25 16 22 H 0.13 3.42 5.88 -2.39 -0.01 3.41 16 23 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 24 H 0.00 0.23 6.40 -2.39 -0.02 0.21 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.10 4.26 7.18 -2.39 -0.02 4.24 16 27 H 0.11 2.67 5.99 -2.39 -0.01 2.65 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.10 2.62 7.47 -2.39 -0.02 2.61 16 Total: -1.00 -75.88 253.82 2.76 -73.12 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.12 Total: 6.12 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 3.17 Total: -18.87 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.53 Total: -85.68 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.02 Total: -23.44 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -75.88 2.76 -73.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.497 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds