Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47147 * 119.99695 * 2 1 3 5 5 H 1.07990 * 120.00297 * 119.99800 * 4 2 1 6 6 C 1.37887 * 119.99961 * 300.00353 * 4 2 1 7 7 N 1.31514 * 119.99663 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99917 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47198 * 59.99699 * 8 6 4 10 10 H 1.48498 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47263 * 299.99661 * 8 6 4 12 12 N 1.46495 * 109.47311 * 239.99721 * 2 1 3 13 13 C 1.34784 * 119.99820 * 84.99922 * 12 2 1 14 14 O 1.21282 * 119.99704 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99807 * 180.02562 * 13 12 2 16 16 H 1.09001 * 115.54991 * 34.33018 * 15 13 12 17 17 C 1.52994 * 117.49691 * 248.62265 * 15 13 12 18 18 C 1.52994 * 117.49849 * 179.97438 * 15 13 12 19 19 H 1.09005 * 117.49928 * 359.97438 * 18 15 13 20 20 C 1.52997 * 117.50137 * 214.97889 * 18 15 13 21 21 H 1.09000 * 109.47521 * 300.00205 * 1 2 3 22 22 H 1.09004 * 109.47389 * 60.00252 * 1 2 3 23 23 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 24 24 H 0.97008 * 119.99532 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00259 * 265.00478 * 12 2 1 26 26 H 1.08997 * 117.49825 * 145.01984 * 17 15 13 27 27 H 1.08999 * 117.49881 * 359.97438 * 17 15 13 28 28 H 1.09002 * 109.47153 * 60.00005 * 20 18 15 29 29 H 1.09001 * 109.46832 * 300.00196 * 20 18 15 30 30 H 1.09004 * 109.47261 * 180.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0078 10 1 1.8278 -0.4189 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8581 1.1584 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 1 2.3511 -1.7732 -3.6819 17 6 4.0307 -0.3376 -4.1152 18 6 2.7724 0.0890 -4.8748 19 1 2.4902 1.1410 -4.8316 20 6 2.4693 -0.6218 -6.1953 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7094 1.1620 3.4844 25 1 2.2490 -1.6317 -1.1525 26 1 4.6423 -1.1245 -4.5565 27 1 4.5766 0.4341 -3.5725 28 1 1.4425 -0.9875 -6.1838 29 1 3.1527 -1.4616 -6.3210 30 1 2.5972 0.0772 -7.0219 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337222.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = -29.756743 kcal Electronic energy + Delta-G solvation = -12388.657316 eV Core-core repulsion = 10184.184477 eV Total energy + Delta-G solvation = -2204.472839 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26910 -36.56602 -34.60769 -32.31300 -29.30469 -28.25990 -25.24495 -23.79374 -21.04446 -20.15507 -19.25961 -17.32114 -15.84084 -15.26226 -14.52807 -14.44348 -13.73212 -13.32651 -13.08825 -12.56294 -12.32870 -11.89337 -11.65748 -11.29015 -11.08561 -10.94379 -10.74531 -10.32155 -10.21788 -10.11791 -9.85347 -9.03654 -8.94683 -8.52671 -7.86227 -6.10424 -4.19751 3.20499 3.26827 3.31772 3.33182 3.99269 4.20123 4.38863 4.97119 4.98139 5.17410 5.21643 5.39954 5.61265 5.75898 5.77909 5.86731 6.06195 6.17907 6.45171 6.85416 6.99939 7.17963 7.50336 7.59986 7.72520 7.94507 8.17421 8.72339 8.81228 9.19405 9.48082 10.95605 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.068692 B = 0.007668 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.520915 B = 3650.466366 C = 3849.775159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.528 3.472 14 O -0.558 6.558 15 C -0.186 4.186 16 H 0.116 0.884 17 C -0.152 4.152 18 C -0.129 4.129 19 H 0.115 0.885 20 C -0.121 4.121 21 H 0.090 0.910 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.389 0.611 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -5.072 -10.888 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.352 5.352 13 C 0.313 3.687 14 O -0.438 6.438 15 C -0.207 4.207 16 H 0.134 0.866 17 C -0.190 4.190 18 C -0.148 4.148 19 H 0.133 0.867 20 C -0.178 4.178 21 H 0.108 0.892 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.127 -4.099 -10.727 11.901 hybrid contribution 0.366 -1.015 0.997 1.469 sum 3.493 -5.114 -9.730 11.534 Atomic orbital electron populations 1.22077 0.98498 0.99098 1.00879 1.18740 0.91027 0.93979 0.80077 0.93458 1.21194 1.32462 1.13226 0.90364 0.92124 1.24900 0.94821 0.94969 0.99064 1.69901 1.35871 1.22430 1.23966 0.86492 0.79154 0.79570 0.81774 1.20187 1.21116 1.20159 1.46456 1.64813 1.13584 1.10359 1.19539 0.78259 0.86910 0.83966 1.90633 1.51728 1.16240 1.85173 1.22411 1.02725 1.00574 0.95019 0.86567 1.23042 0.89737 1.03290 1.02929 1.22327 1.01057 1.00431 0.90968 0.86662 1.21376 1.01579 0.99749 0.95080 0.89160 0.96660 0.95479 0.92527 0.77887 0.88328 0.88412 0.92132 0.92622 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 2 C 0.26 6.93 2.56 -69.09 -0.18 6.75 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.46 8.73 -34.44 -0.30 -14.76 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.35 5.07 -54.93 -0.28 -15.63 16 13 C 0.53 11.10 7.58 -10.98 -0.08 11.02 16 14 O -0.56 -13.97 15.92 5.56 0.09 -13.88 16 15 C -0.19 -2.87 5.91 -91.78 -0.54 -3.41 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.15 -2.02 9.88 -26.71 -0.26 -2.28 16 18 C -0.13 -1.78 5.92 -90.60 -0.54 -2.31 16 19 H 0.12 1.81 7.67 -51.93 -0.40 1.41 16 20 C -0.12 -1.25 10.19 37.16 0.38 -0.87 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.39 7.33 8.54 -40.82 -0.35 6.98 16 26 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -30.79 259.20 -6.31 -37.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.36 Total: 4.96 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.28 Total: -7.60 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.35 Total: -40.32 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.79 -6.31 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337222.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.345 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds