Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47147 * 119.99695 * 2 1 3 5 5 H 1.07990 * 120.00297 * 119.99800 * 4 2 1 6 6 C 1.37887 * 119.99961 * 300.00353 * 4 2 1 7 7 N 1.31514 * 119.99663 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99917 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47198 * 59.99699 * 8 6 4 10 10 H 1.48498 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47263 * 299.99661 * 8 6 4 12 12 N 1.46495 * 109.47311 * 239.99721 * 2 1 3 13 13 C 1.34784 * 119.99820 * 84.99922 * 12 2 1 14 14 O 1.21282 * 119.99704 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99807 * 180.02562 * 13 12 2 16 16 H 1.09001 * 115.54991 * 34.33018 * 15 13 12 17 17 C 1.52994 * 117.49691 * 248.62265 * 15 13 12 18 18 C 1.52994 * 117.49849 * 179.97438 * 15 13 12 19 19 H 1.09005 * 117.49928 * 359.97438 * 18 15 13 20 20 C 1.52997 * 117.50137 * 214.97889 * 18 15 13 21 21 H 1.09000 * 109.47521 * 300.00205 * 1 2 3 22 22 H 1.09004 * 109.47389 * 60.00252 * 1 2 3 23 23 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 24 24 H 0.97008 * 119.99532 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00259 * 265.00478 * 12 2 1 26 26 H 1.08997 * 117.49825 * 145.01984 * 17 15 13 27 27 H 1.08999 * 117.49881 * 359.97438 * 17 15 13 28 28 H 1.09002 * 109.47153 * 60.00005 * 20 18 15 29 29 H 1.09001 * 109.46832 * 300.00196 * 20 18 15 30 30 H 1.09004 * 109.47261 * 180.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0078 10 1 1.8278 -0.4189 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8581 1.1584 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 1 2.3511 -1.7732 -3.6819 17 6 4.0307 -0.3376 -4.1152 18 6 2.7724 0.0890 -4.8748 19 1 2.4902 1.1410 -4.8316 20 6 2.4693 -0.6218 -6.1953 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7094 1.1620 3.4844 25 1 2.2490 -1.6317 -1.1525 26 1 4.6423 -1.1245 -4.5565 27 1 4.5766 0.4341 -3.5725 28 1 1.4425 -0.9875 -6.1838 29 1 3.1527 -1.4616 -6.3210 30 1 2.5972 0.0772 -7.0219 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337222.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = -50.427459 kcal Electronic energy + Delta-G solvation = -12389.553666 eV Core-core repulsion = 10184.184477 eV Total energy + Delta-G solvation = -2205.369189 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86746 -37.95185 -36.53454 -34.31626 -31.12328 -29.37797 -27.37349 -25.28341 -22.62257 -21.54857 -20.93246 -19.01116 -17.67708 -17.17795 -16.27791 -15.91211 -15.32827 -14.72037 -14.45867 -14.16811 -13.73749 -13.61658 -13.02827 -12.92310 -12.85307 -12.76751 -12.29426 -12.26830 -12.15900 -11.27562 -11.15356 -10.97254 -10.69274 -10.56623 -9.77394 -8.19107 -6.37485 1.44283 1.46957 1.54932 1.66261 2.33488 2.58516 2.93152 3.11206 3.83124 3.86174 3.95801 4.30298 4.44796 4.69555 4.79492 4.88578 4.90226 4.98012 5.06061 5.09610 5.23988 5.40725 5.46104 5.59180 5.66549 5.88720 6.07249 6.70223 6.96291 7.30367 7.55211 8.87330 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.068692 B = 0.007668 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.520915 B = 3650.466366 C = 3849.775159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.701 5.701 13 C 0.520 3.480 14 O -0.608 6.608 15 C -0.196 4.196 16 H 0.150 0.850 17 C -0.136 4.136 18 C -0.128 4.128 19 H 0.086 0.914 20 C -0.114 4.114 21 H 0.067 0.933 22 H 0.010 0.990 23 H 0.042 0.958 24 H 0.266 0.734 25 H 0.406 0.594 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 -7.506 -11.702 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.308 3.692 14 O -0.491 6.491 15 C -0.216 4.216 16 H 0.167 0.833 17 C -0.173 4.173 18 C -0.147 4.147 19 H 0.104 0.896 20 C -0.171 4.171 21 H 0.086 0.914 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.157 0.843 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.237 -6.574 -11.569 13.965 hybrid contribution 0.025 -0.181 1.211 1.225 sum 4.262 -6.755 -10.358 13.080 Atomic orbital electron populations 1.21899 0.98300 0.99525 0.99493 1.18360 0.91182 0.91839 0.82153 0.98737 1.21520 1.32784 1.13669 0.90768 0.90776 1.25862 0.94799 0.95587 1.02482 1.70059 1.36964 1.23951 1.24759 0.85332 0.78628 0.78693 0.77283 1.19533 1.21086 1.18714 1.46234 1.64850 1.14285 1.09559 1.20548 0.76967 0.86506 0.85155 1.90606 1.53689 1.18734 1.86088 1.22373 1.04832 1.01698 0.92740 0.83258 1.23190 0.89016 1.03528 1.01549 1.22424 1.01162 0.99132 0.91976 0.89613 1.21382 1.02279 1.00405 0.93015 0.91401 0.97134 0.93922 0.92476 0.75901 0.84279 0.90261 0.91937 0.90306 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 2 C 0.27 14.48 2.56 44.25 0.11 14.60 16 3 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 4 C -0.55 -29.77 8.73 25.60 0.22 -29.54 16 5 H 0.07 3.72 7.74 -2.92 -0.02 3.70 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.49 16 8 Si 0.98 42.34 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 12 N -0.70 -30.58 5.07 -446.09 -2.26 -32.84 16 13 C 0.52 22.05 7.58 87.66 0.66 22.72 16 14 O -0.61 -31.77 15.92 -3.04 -0.05 -31.82 16 15 C -0.20 -5.66 5.91 -11.54 -0.07 -5.72 16 16 H 0.15 3.33 8.14 -2.39 -0.02 3.32 16 17 C -0.14 -3.24 9.88 30.61 0.30 -2.94 16 18 C -0.13 -3.30 5.92 -10.78 -0.06 -3.36 16 19 H 0.09 2.73 7.67 -2.38 -0.02 2.71 16 20 C -0.11 -1.97 10.19 71.98 0.73 -1.24 16 21 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 22 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 25 H 0.41 14.77 8.54 -92.71 -0.79 13.98 16 26 H 0.14 2.24 8.05 -2.39 -0.02 2.22 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.03 7.90 -2.39 -0.02 1.01 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -68.89 259.20 3.31 -65.58 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.33 Total: 18.91 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.02 Total: -10.71 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.02 Total: -86.33 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -68.89 3.31 -65.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337222.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.155 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds