Wall clock time and date at job start Mon Mar 30 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 H 1.08997 * 115.55272 * 34.28403 * 15 13 12 17 17 C 1.53001 * 117.49692 * 248.60721 * 15 13 12 18 18 C 1.52993 * 60.00240 * 252.51663 * 17 15 13 19 19 H 1.09005 * 117.50007 * 252.51737 * 18 17 15 20 20 C 1.52997 * 117.50292 * 107.49243 * 18 17 15 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 26 26 H 1.09004 * 117.50090 * 0.02562 * 17 15 13 27 27 H 1.09003 * 117.49836 * 145.02185 * 17 15 13 28 28 H 1.09002 * 109.47188 * 351.37683 * 20 18 17 29 29 H 1.08998 * 109.47517 * 111.37839 * 20 18 17 30 30 H 1.08997 * 109.47250 * 231.38002 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 2.3517 -1.7730 -3.6817 17 6 4.0305 -0.3369 -4.1156 18 6 2.7726 0.0897 -4.8748 19 1 2.5565 -0.4166 -5.8156 20 6 2.3773 1.5664 -4.8138 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.2490 -1.6317 -1.1527 26 1 4.5767 0.4343 -3.5725 27 1 4.6422 -1.1238 -4.5570 28 1 3.0035 2.0804 -4.0845 29 1 2.5152 2.0204 -5.7951 30 1 1.3315 1.6508 -4.5183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337225.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:46 Heat of formation + Delta-G solvation = -25.199977 kcal Electronic energy + Delta-G solvation = -12572.903728 eV Core-core repulsion = 10368.628485 eV Total energy + Delta-G solvation = -2204.275243 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38663 -36.41092 -34.53292 -32.33195 -29.22886 -27.95824 -25.24334 -23.85055 -21.10784 -20.19095 -19.18373 -16.93440 -16.07124 -15.13135 -14.87265 -14.19103 -13.74700 -13.08295 -12.75739 -12.37183 -12.20315 -12.00426 -11.57558 -11.26323 -11.06629 -10.94720 -10.70678 -10.30836 -10.21508 -9.94366 -9.80453 -9.02962 -8.75007 -8.51068 -7.84215 -6.10566 -4.19804 3.23116 3.26614 3.31533 3.32958 4.02314 4.22806 4.40150 4.89967 5.11889 5.21297 5.23726 5.54393 5.64149 5.89542 6.04960 6.13536 6.24149 6.37875 6.81492 6.86160 7.00532 7.18207 7.51499 7.60803 7.72809 7.94886 8.17681 8.73376 8.81880 9.21331 9.48250 10.95414 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064138 B = 0.008330 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.455220 B = 3360.371395 C = 3576.973631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.528 3.472 14 O -0.551 6.551 15 C -0.190 4.190 16 H 0.115 0.885 17 C -0.156 4.156 18 C -0.124 4.124 19 H 0.104 0.896 20 C -0.109 4.109 21 H 0.089 0.911 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.265 0.735 25 H 0.388 0.612 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -3.965 -10.147 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.313 3.687 14 O -0.431 6.431 15 C -0.211 4.211 16 H 0.133 0.867 17 C -0.193 4.193 18 C -0.143 4.143 19 H 0.122 0.878 20 C -0.166 4.166 21 H 0.108 0.892 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.220 0.780 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.016 -2.983 -9.983 10.847 hybrid contribution 0.379 -1.142 0.954 1.535 sum 3.395 -4.125 -9.029 10.491 Atomic orbital electron populations 1.22074 0.98532 0.99049 1.00851 1.18718 0.90978 0.93953 0.80070 0.93462 1.21203 1.32442 1.13215 0.90403 0.92152 1.24896 0.94830 0.94965 0.99048 1.69899 1.35872 1.22445 1.23949 0.86504 0.79159 0.79593 0.81814 1.21108 1.20161 1.20191 1.46494 1.64896 1.13575 1.10404 1.19521 0.78357 0.86949 0.83836 1.90640 1.51532 1.16004 1.84892 1.22406 1.02790 1.00501 0.95398 0.86668 1.23021 0.89729 1.03476 1.03092 1.22294 1.00754 0.97326 0.93878 0.87798 1.21328 1.03237 0.92152 0.99836 0.89198 0.96665 0.95542 0.92536 0.77986 0.88362 0.88450 0.91635 0.93976 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.89 2.56 -69.09 -0.18 6.72 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.71 -15.22 5.07 -54.93 -0.28 -15.50 16 13 C 0.53 10.85 7.56 -10.98 -0.08 10.77 16 14 O -0.55 -13.14 12.77 5.56 0.07 -13.06 16 15 C -0.19 -2.90 6.19 -91.77 -0.57 -3.47 16 16 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.16 -2.06 9.88 -26.73 -0.26 -2.32 16 18 C -0.12 -1.70 6.41 -90.62 -0.58 -2.28 16 19 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.11 -1.66 8.43 37.16 0.31 -1.34 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.39 7.29 8.54 -40.82 -0.35 6.94 16 26 H 0.10 1.42 8.05 -51.93 -0.42 1.00 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.18 7.26 -51.93 -0.38 0.80 16 LS Contribution 253.74 15.07 3.82 3.82 Total: -1.00 -30.03 253.74 -6.48 -36.52 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.29 Total: 5.36 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.41 Total: -8.35 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.35 Total: -40.12 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.03 -6.48 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337225.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.315 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds