Wall clock time and date at job start Mon Mar 30 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 H 1.08997 * 115.55272 * 34.28403 * 15 13 12 17 17 C 1.53001 * 117.49692 * 248.60721 * 15 13 12 18 18 C 1.52993 * 60.00240 * 252.51663 * 17 15 13 19 19 H 1.09005 * 117.50007 * 252.51737 * 18 17 15 20 20 C 1.52997 * 117.50292 * 107.49243 * 18 17 15 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 26 26 H 1.09004 * 117.50090 * 0.02562 * 17 15 13 27 27 H 1.09003 * 117.49836 * 145.02185 * 17 15 13 28 28 H 1.09002 * 109.47188 * 351.37683 * 20 18 17 29 29 H 1.08998 * 109.47517 * 111.37839 * 20 18 17 30 30 H 1.08997 * 109.47250 * 231.38002 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 2.3517 -1.7730 -3.6817 17 6 4.0305 -0.3369 -4.1156 18 6 2.7726 0.0897 -4.8748 19 1 2.5565 -0.4166 -5.8156 20 6 2.3773 1.5664 -4.8138 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.2490 -1.6317 -1.1527 26 1 4.5767 0.4343 -3.5725 27 1 4.6422 -1.1238 -4.5570 28 1 3.0035 2.0804 -4.0845 29 1 2.5152 2.0204 -5.7951 30 1 1.3315 1.6508 -4.5183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337225.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:46 Heat of formation + Delta-G solvation = -45.121063 kcal Electronic energy + Delta-G solvation = -12573.767571 eV Core-core repulsion = 10368.628485 eV Total energy + Delta-G solvation = -2205.139086 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.92705 -37.85912 -36.38693 -34.30796 -31.11160 -29.28674 -27.36268 -25.33811 -22.60402 -21.71087 -20.86302 -18.66071 -17.68379 -17.09061 -16.28346 -15.93434 -15.38240 -14.71879 -14.41828 -14.02552 -13.76028 -13.46103 -13.17066 -12.98091 -12.83688 -12.69913 -12.33246 -12.27947 -12.14759 -11.15349 -11.10126 -10.95563 -10.63693 -10.33887 -9.71097 -8.18829 -6.36939 1.43742 1.46255 1.54188 1.73562 2.34647 2.63029 2.95727 3.11467 3.75292 3.96413 4.03083 4.31525 4.51726 4.72141 4.85190 4.90045 4.93531 4.99656 5.07812 5.08910 5.21433 5.41998 5.57034 5.64027 5.69884 5.91403 6.09226 6.71338 7.01816 7.31409 7.61266 8.87427 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064138 B = 0.008330 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.455220 B = 3360.371395 C = 3576.973631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.285 1.285 10 H -0.263 1.263 11 H -0.270 1.270 12 N -0.705 5.705 13 C 0.519 3.481 14 O -0.593 6.593 15 C -0.201 4.201 16 H 0.149 0.851 17 C -0.139 4.139 18 C -0.119 4.119 19 H 0.143 0.857 20 C -0.108 4.108 21 H 0.066 0.934 22 H 0.010 0.990 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.404 0.596 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -6.261 -11.169 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.013 0.987 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.211 1.211 10 H -0.188 1.188 11 H -0.196 1.196 12 N -0.354 5.354 13 C 0.306 3.694 14 O -0.475 6.475 15 C -0.222 4.222 16 H 0.167 0.833 17 C -0.176 4.176 18 C -0.137 4.137 19 H 0.161 0.839 20 C -0.165 4.165 21 H 0.085 0.915 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.239 0.761 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.128 -5.313 -11.034 12.923 hybrid contribution 0.035 -0.342 1.223 1.270 sum 4.164 -5.655 -9.811 12.065 Atomic orbital electron populations 1.21889 0.98383 0.99380 0.99463 1.18308 0.91065 0.91796 0.82123 0.98698 1.21539 1.32718 1.13632 0.90892 0.90896 1.25846 0.94834 0.95593 1.02432 1.70055 1.36971 1.23951 1.24712 0.85364 0.78641 0.78722 0.77413 1.21060 1.18755 1.19554 1.46280 1.65175 1.14236 1.09669 1.20524 0.77209 0.86675 0.84943 1.90630 1.53040 1.18160 1.85690 1.22387 1.04854 1.01738 0.93229 0.83341 1.23149 0.89055 1.03681 1.01721 1.22492 1.00724 0.95912 0.94557 0.83892 1.21260 1.00829 0.93985 1.00450 0.91515 0.97054 0.94123 0.92503 0.76147 0.90371 0.84380 0.94646 0.91012 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.51 2.56 44.24 0.11 14.62 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.79 8.73 25.60 0.22 -29.56 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.71 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 8 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 9 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.71 -30.42 5.07 -446.10 -2.26 -32.68 16 13 C 0.52 21.38 7.56 87.66 0.66 22.04 16 14 O -0.59 -29.46 12.77 -3.02 -0.04 -29.50 16 15 C -0.20 -5.65 6.19 -11.54 -0.07 -5.72 16 16 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 17 C -0.14 -3.22 9.88 30.59 0.30 -2.92 16 18 C -0.12 -2.89 6.41 -10.80 -0.07 -2.96 16 19 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 20 C -0.11 -3.24 8.43 71.98 0.61 -2.63 16 21 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 22 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 25 H 0.40 14.67 8.54 -92.70 -0.79 13.88 16 26 H 0.08 2.15 8.05 -2.38 -0.02 2.14 16 27 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.03 1.24 7.02 -2.39 -0.02 1.23 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.44 7.26 -2.39 -0.02 1.42 16 Total: -1.00 -67.52 253.74 3.19 -64.33 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.33 Total: 19.06 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 2.88 Total: -12.24 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.02 Total: -86.10 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -67.52 3.19 -64.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337225.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.212 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds