Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47003 * 2 1 4 4 N 1.46501 * 109.46771 * 120.00129 * 2 1 3 5 5 C 1.37092 * 119.99950 * 305.39699 * 4 2 1 6 6 H 1.07997 * 120.00614 * 317.38858 * 5 4 2 7 7 C 1.38956 * 120.00103 * 137.11225 * 5 4 2 8 8 N 1.31411 * 119.99761 * 340.73761 * 7 5 4 9 9 Si 1.86799 * 120.00414 * 160.73374 * 7 5 4 10 10 H 1.48496 * 109.46975 * 90.00298 * 9 7 5 11 11 H 1.48497 * 109.47219 * 210.00047 * 9 7 5 12 12 H 1.48497 * 109.47161 * 330.00513 * 9 7 5 13 13 C 1.34778 * 120.00140 * 125.40298 * 4 2 1 14 14 O 1.21285 * 120.00109 * 179.97438 * 13 4 2 15 15 C 1.50705 * 119.99625 * 0.02562 * 13 4 2 16 16 C 1.53000 * 117.49335 * 248.61731 * 15 13 4 17 17 C 1.52994 * 60.00211 * 252.51497 * 16 15 13 18 18 H 1.08997 * 109.47005 * 296.62687 * 1 2 3 19 19 H 1.09003 * 109.46763 * 56.63255 * 1 2 3 20 20 H 1.09003 * 109.46923 * 176.62680 * 1 2 3 21 21 H 1.09001 * 109.46989 * 239.99685 * 2 1 3 22 22 H 1.09005 * 109.47058 * 183.48868 * 3 2 1 23 23 H 1.09002 * 109.47164 * 303.49169 * 3 2 1 24 24 H 1.09005 * 109.47413 * 63.49121 * 3 2 1 25 25 H 0.97004 * 120.00121 * 179.97438 * 8 7 5 26 26 H 1.08993 * 115.55156 * 34.32536 * 15 13 4 27 27 H 1.09002 * 117.50064 * 0.02562 * 16 15 13 28 28 H 1.09006 * 117.49773 * 145.01695 * 16 15 13 29 29 H 1.09007 * 117.49873 * 252.51379 * 17 16 15 30 30 H 1.08996 * 117.52024 * 107.48320 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5984 -0.2903 2.4383 6 1 1.5329 0.7618 2.6731 7 6 1.2513 -1.2381 3.3933 8 7 0.9574 -2.4648 3.0251 9 14 1.2027 -0.7685 5.2007 10 1 -0.1564 -0.2825 5.5494 11 1 1.5315 -1.9559 6.0296 12 1 2.1943 0.3061 5.4598 13 6 2.8804 -1.7196 1.0756 14 8 3.2850 -2.2911 2.0659 15 6 3.3426 -2.1592 -0.2898 16 6 2.8658 -3.5238 -0.7914 17 6 4.3213 -3.3331 -0.3602 18 1 -0.3633 0.4606 0.9187 19 1 -0.3633 0.5652 -0.8583 20 1 -0.3633 -1.0259 -0.0605 21 1 1.8934 -0.5139 -0.8900 22 1 3.1283 1.4431 -0.0625 23 1 1.6265 1.9741 -0.8571 24 1 1.7287 1.9380 0.9196 25 1 0.7155 -3.1266 3.6918 26 1 3.4568 -1.3638 -1.0262 27 1 2.2176 -4.1033 -0.1341 28 1 2.6661 -3.6262 -1.8581 29 1 5.0794 -3.3101 -1.1432 30 1 4.6313 -3.7871 0.5810 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058518106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -3.752067 kcal Electronic energy + Delta-G solvation = -13210.689006 eV Core-core repulsion = 11007.343814 eV Total energy + Delta-G solvation = -2203.345192 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.69442 -35.89687 -34.54379 -32.12830 -29.81876 -26.36805 -25.61603 -22.62441 -21.77403 -20.49381 -18.64326 -16.68821 -15.65854 -14.92242 -14.14729 -13.96391 -13.25274 -13.18039 -13.00186 -11.97010 -11.87605 -11.47234 -11.34197 -10.97208 -10.92185 -10.73638 -10.68255 -10.42716 -10.14493 -9.93531 -9.73115 -9.51514 -8.64998 -7.94200 -6.98718 -6.01902 -3.74123 3.34613 3.44475 3.47306 4.01768 4.35793 4.78301 5.03027 5.37571 5.47883 5.63369 5.68814 5.74522 5.97705 6.09613 6.13473 6.16862 6.30614 6.36988 6.56146 6.62962 6.66589 6.75759 6.79174 7.01670 7.20966 7.72219 8.38389 9.18887 9.31405 9.79607 10.45559 11.07497 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030390 B = 0.016598 C = 0.012523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.149128 B = 1686.568749 C = 2235.334001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.124 3.876 3 C -0.155 4.155 4 N -0.447 5.447 5 C -0.343 4.343 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.831 5.831 9 Si 0.906 3.094 10 H -0.284 1.284 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.503 3.497 14 O -0.538 6.538 15 C -0.177 4.177 16 C -0.161 4.161 17 C -0.159 4.159 18 H 0.065 0.935 19 H 0.039 0.961 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.261 0.739 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 2.613 -7.651 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.169 5.169 5 C -0.470 4.470 6 H 0.094 0.906 7 C -0.138 4.138 8 N -0.465 5.465 9 Si 0.734 3.266 10 H -0.210 1.210 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.290 3.710 14 O -0.417 6.417 15 C -0.199 4.199 16 C -0.198 4.198 17 C -0.197 4.197 18 H 0.084 0.916 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.067 2.141 -7.062 7.456 hybrid contribution -0.165 0.196 0.763 0.805 sum 0.902 2.337 -6.299 6.779 Atomic orbital electron populations 1.21911 0.95823 1.01447 1.00847 1.21026 0.94318 0.92742 0.90042 1.22102 1.00392 0.97539 1.01300 1.43247 1.38615 1.30637 1.04368 1.18814 1.47352 0.92429 0.88371 0.90631 1.25171 0.93980 0.95228 0.99467 1.69874 1.39011 1.03466 1.34170 0.86315 0.77734 0.78116 0.84453 1.21037 1.21113 1.19743 1.18998 0.80822 0.83449 0.87728 1.90493 1.57542 1.54827 1.38822 1.22374 1.05874 0.92280 0.99332 1.22786 0.97849 0.98853 1.00331 1.22781 0.92170 1.01807 1.02933 0.91573 0.94190 0.92996 0.91549 0.93451 0.93405 0.92056 0.92885 0.87777 0.88377 0.89402 0.89432 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.14 37.16 0.34 -2.41 16 2 C 0.12 2.50 3.11 -67.93 -0.21 2.29 16 3 C -0.15 -2.72 9.29 37.16 0.35 -2.37 16 4 N -0.45 -11.37 2.45 -107.73 -0.26 -11.64 16 5 C -0.34 -9.52 7.72 -14.93 -0.12 -9.63 16 6 H 0.08 2.03 7.05 -52.49 -0.37 1.66 16 7 C 0.07 2.05 4.35 -17.47 -0.08 1.98 16 8 N -0.83 -25.07 11.69 55.50 0.65 -24.42 16 9 Si 0.91 22.40 29.60 -169.99 -5.03 17.37 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.50 13.23 6.76 -10.98 -0.07 13.15 16 14 O -0.54 -16.43 13.92 5.55 0.08 -16.35 16 15 C -0.18 -3.62 4.94 -91.77 -0.45 -4.07 16 16 C -0.16 -2.94 10.23 -26.73 -0.27 -3.21 16 17 C -0.16 -2.90 10.04 -26.73 -0.27 -3.17 16 18 H 0.07 1.38 7.43 -51.93 -0.39 1.00 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.07 1.23 5.53 -51.93 -0.29 0.94 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.10 1.86 6.75 -51.93 -0.35 1.51 16 27 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 2.07 7.67 -51.93 -0.40 1.67 16 LS Contribution 251.41 15.07 3.79 3.79 Total: -1.00 -32.56 251.41 -5.82 -38.38 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.26 Total: 0.32 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.79 Total: -7.45 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.39 Total: -36.06 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.08 Total: -16.35 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.56 -5.82 -38.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058518106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.629 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds