Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47003 * 2 1 4 4 N 1.46501 * 109.46771 * 120.00129 * 2 1 3 5 5 C 1.37092 * 119.99950 * 305.39699 * 4 2 1 6 6 H 1.07997 * 120.00614 * 317.38858 * 5 4 2 7 7 C 1.38956 * 120.00103 * 137.11225 * 5 4 2 8 8 N 1.31411 * 119.99761 * 340.73761 * 7 5 4 9 9 Si 1.86799 * 120.00414 * 160.73374 * 7 5 4 10 10 H 1.48496 * 109.46975 * 90.00298 * 9 7 5 11 11 H 1.48497 * 109.47219 * 210.00047 * 9 7 5 12 12 H 1.48497 * 109.47161 * 330.00513 * 9 7 5 13 13 C 1.34778 * 120.00140 * 125.40298 * 4 2 1 14 14 O 1.21285 * 120.00109 * 179.97438 * 13 4 2 15 15 C 1.50705 * 119.99625 * 0.02562 * 13 4 2 16 16 C 1.53000 * 117.49335 * 248.61731 * 15 13 4 17 17 C 1.52994 * 60.00211 * 252.51497 * 16 15 13 18 18 H 1.08997 * 109.47005 * 296.62687 * 1 2 3 19 19 H 1.09003 * 109.46763 * 56.63255 * 1 2 3 20 20 H 1.09003 * 109.46923 * 176.62680 * 1 2 3 21 21 H 1.09001 * 109.46989 * 239.99685 * 2 1 3 22 22 H 1.09005 * 109.47058 * 183.48868 * 3 2 1 23 23 H 1.09002 * 109.47164 * 303.49169 * 3 2 1 24 24 H 1.09005 * 109.47413 * 63.49121 * 3 2 1 25 25 H 0.97004 * 120.00121 * 179.97438 * 8 7 5 26 26 H 1.08993 * 115.55156 * 34.32536 * 15 13 4 27 27 H 1.09002 * 117.50064 * 0.02562 * 16 15 13 28 28 H 1.09006 * 117.49773 * 145.01695 * 16 15 13 29 29 H 1.09007 * 117.49873 * 252.51379 * 17 16 15 30 30 H 1.08996 * 117.52024 * 107.48320 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5984 -0.2903 2.4383 6 1 1.5329 0.7618 2.6731 7 6 1.2513 -1.2381 3.3933 8 7 0.9574 -2.4648 3.0251 9 14 1.2027 -0.7685 5.2007 10 1 -0.1564 -0.2825 5.5494 11 1 1.5315 -1.9559 6.0296 12 1 2.1943 0.3061 5.4598 13 6 2.8804 -1.7196 1.0756 14 8 3.2850 -2.2911 2.0659 15 6 3.3426 -2.1592 -0.2898 16 6 2.8658 -3.5238 -0.7914 17 6 4.3213 -3.3331 -0.3602 18 1 -0.3633 0.4606 0.9187 19 1 -0.3633 0.5652 -0.8583 20 1 -0.3633 -1.0259 -0.0605 21 1 1.8934 -0.5139 -0.8900 22 1 3.1283 1.4431 -0.0625 23 1 1.6265 1.9741 -0.8571 24 1 1.7287 1.9380 0.9196 25 1 0.7155 -3.1266 3.6918 26 1 3.4568 -1.3638 -1.0262 27 1 2.2176 -4.1033 -0.1341 28 1 2.6661 -3.6262 -1.8581 29 1 5.0794 -3.3101 -1.1432 30 1 4.6313 -3.7871 0.5810 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058518106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = -24.782231 kcal Electronic energy + Delta-G solvation = -13211.600942 eV Core-core repulsion = 11007.343814 eV Total energy + Delta-G solvation = -2204.257128 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54310 -37.55232 -36.38641 -34.18695 -31.68016 -27.85891 -27.61152 -24.45794 -23.21441 -22.17554 -20.53696 -18.47554 -17.51917 -16.90372 -16.00232 -15.65483 -15.05751 -14.93998 -14.61883 -13.67840 -13.48749 -13.35100 -13.06646 -12.81186 -12.59176 -12.48761 -12.36294 -12.16913 -11.94397 -11.58178 -11.25895 -11.10441 -10.72910 -9.97507 -9.04239 -8.17088 -5.91512 1.35276 1.42587 1.50003 2.21977 2.39957 3.01533 3.27075 3.37846 3.97110 4.07814 4.18459 4.21824 4.42813 4.56170 4.61606 4.76832 4.93529 4.94638 5.06822 5.12560 5.13768 5.22101 5.33891 5.47981 5.58469 5.63131 6.25792 7.09908 7.29727 7.77916 8.45342 8.92062 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030390 B = 0.016598 C = 0.012523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.149128 B = 1686.568749 C = 2235.334001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.113 3.887 3 C -0.146 4.146 4 N -0.460 5.460 5 C -0.350 4.350 6 H 0.079 0.921 7 C 0.019 3.981 8 N -0.869 5.869 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.296 1.296 12 H -0.269 1.269 13 C 0.482 3.518 14 O -0.598 6.598 15 C -0.192 4.192 16 C -0.147 4.147 17 C -0.147 4.147 18 H 0.041 0.959 19 H 0.085 0.915 20 H 0.027 0.973 21 H 0.091 0.909 22 H 0.048 0.952 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.255 0.745 26 H 0.140 0.860 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 3.866 -9.882 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 C -0.204 4.204 4 N -0.181 5.181 5 C -0.478 4.478 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.505 5.505 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.222 1.222 12 H -0.193 1.193 13 C 0.272 3.728 14 O -0.480 6.480 15 C -0.213 4.213 16 C -0.184 4.184 17 C -0.185 4.185 18 H 0.061 0.939 19 H 0.104 0.896 20 H 0.047 0.953 21 H 0.109 0.891 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.288 3.441 -9.322 10.020 hybrid contribution -0.229 -0.150 1.393 1.420 sum 1.059 3.291 -7.929 8.650 Atomic orbital electron populations 1.21841 0.95292 1.00443 1.01631 1.21388 0.94837 0.94108 0.88673 1.22021 1.00598 0.95634 1.02184 1.43577 1.38387 1.30755 1.05369 1.19096 1.46202 0.92507 0.90012 0.90364 1.25995 0.94065 0.95277 1.03372 1.69993 1.41169 1.04486 1.34825 0.85422 0.78615 0.77328 0.79745 1.18977 1.22227 1.19318 1.20045 0.80256 0.82938 0.89602 1.90444 1.59571 1.56628 1.41396 1.22304 1.07972 0.94178 0.96818 1.22838 0.97265 0.96232 1.02108 1.22869 0.93169 0.99561 1.02860 0.93949 0.89648 0.95349 0.89146 0.93300 0.89320 0.93911 0.93640 0.84260 0.92008 0.84672 0.84737 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.14 71.98 0.66 -4.29 16 2 C 0.11 4.34 3.11 44.99 0.14 4.48 16 3 C -0.15 -4.68 9.29 71.98 0.67 -4.01 16 4 N -0.46 -23.41 2.45 -613.13 -1.50 -24.91 16 5 C -0.35 -19.75 7.72 84.04 0.65 -19.10 16 6 H 0.08 4.24 7.05 -2.91 -0.02 4.22 16 7 C 0.02 1.09 4.35 84.93 0.37 1.46 16 8 N -0.87 -54.44 11.69 21.67 0.25 -54.18 16 9 Si 0.96 47.09 29.60 68.60 2.03 49.12 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.48 25.60 6.76 87.66 0.59 26.19 16 14 O -0.60 -37.80 13.92 -3.04 -0.04 -37.85 16 15 C -0.19 -7.45 4.94 -11.54 -0.06 -7.51 16 16 C -0.15 -5.05 10.23 30.59 0.31 -4.74 16 17 C -0.15 -5.05 10.04 30.59 0.31 -4.74 16 18 H 0.04 1.74 7.43 -2.39 -0.02 1.72 16 19 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 20 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.09 3.01 5.53 -2.39 -0.01 3.00 16 22 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.04 1.51 7.11 -2.38 -0.02 1.50 16 25 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.14 4.37 6.75 -2.39 -0.02 4.36 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.14 3.38 8.14 -2.38 -0.02 3.36 16 29 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 30 H 0.07 2.84 7.67 -2.39 -0.02 2.82 16 Total: -1.00 -74.36 251.41 5.49 -68.87 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.11 Total: 11.22 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.64 Total: -12.27 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.25 Total: -79.09 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.04 Total: -37.85 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -74.36 5.49 -68.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058518106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.090 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds