Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.85717 * 2 1 4 4 C 1.54627 * 110.96917 * 236.16313 * 2 1 3 5 5 C 1.51286 * 104.13330 * 216.86728 * 4 2 1 6 6 O 1.21275 * 124.93911 * 196.51851 * 5 4 2 7 7 N 1.34417 * 110.11473 * 16.64836 * 5 4 2 8 8 C 1.46499 * 124.34739 * 180.25325 * 7 5 4 9 9 C 1.53004 * 109.47198 * 269.70156 * 8 7 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.46761 * 111.30398 * 359.97438 * 7 5 4 19 19 H 1.09003 * 109.47055 * 296.21321 * 1 2 3 20 20 H 1.08995 * 109.47351 * 56.21557 * 1 2 3 21 21 H 1.09003 * 109.47216 * 176.21421 * 1 2 3 22 22 H 1.08999 * 110.48533 * 335.75941 * 4 2 1 23 23 H 1.09000 * 110.48539 * 98.40950 * 4 2 1 24 24 H 1.09000 * 109.47602 * 149.70104 * 8 7 5 25 25 H 1.08998 * 109.47492 * 29.70093 * 8 7 5 26 26 H 1.08994 * 109.47074 * 60.00190 * 9 8 7 27 27 H 1.08998 * 109.47285 * 300.00026 * 9 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 29 29 H 1.08997 * 110.24487 * 102.24813 * 18 7 5 30 30 H 1.09001 * 110.24864 * 224.24515 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0833 -0.8040 -1.1993 5 6 3.3115 -1.4933 -0.6468 6 8 4.1906 -1.9898 -1.3187 7 7 3.2851 -1.4778 0.6970 8 6 4.3259 -2.0556 1.5509 9 6 3.9837 -3.5155 1.8550 10 6 5.0547 -4.1101 2.7329 11 1 5.8951 -3.5068 3.0432 12 6 4.9617 -5.4241 3.1399 13 7 3.9386 -6.1588 2.7616 14 14 6.2888 -6.1609 4.2286 15 1 5.9567 -7.5779 4.5237 16 1 7.5968 -6.0939 3.5288 17 1 6.3674 -5.3965 5.4993 18 6 2.0830 -0.8019 1.1989 19 1 -0.3633 0.4539 0.9220 20 1 -0.3634 0.5714 -0.8541 21 1 -0.3634 -1.0254 -0.0679 22 1 1.3505 -1.5361 -1.5385 23 1 2.3593 -0.1336 -2.0132 24 1 4.3840 -1.4942 2.4834 25 1 5.2859 -2.0069 1.0371 26 1 3.9257 -4.0769 0.9226 27 1 3.0237 -3.5643 2.3689 28 1 3.2492 -5.7761 2.1965 29 1 1.3491 -1.5356 1.5322 30 1 2.3422 -0.1286 2.0160 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062816695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -56.891550 kcal Electronic energy + Delta-G solvation = -12500.480654 eV Core-core repulsion = 10294.831161 eV Total energy + Delta-G solvation = -2205.649493 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06158 -36.30232 -34.55062 -32.76899 -29.75876 -28.00466 -26.00951 -24.07344 -21.66435 -20.72297 -18.91461 -16.87230 -16.39625 -15.87774 -14.92547 -13.98723 -13.79882 -13.67289 -13.20870 -12.95975 -12.72039 -12.46298 -12.22306 -11.73596 -11.46601 -11.00601 -10.91951 -10.78899 -10.33744 -10.09400 -10.04469 -9.36106 -8.66294 -8.33003 -8.07944 -6.37506 -4.06894 3.01821 3.43651 3.47420 3.53596 3.65719 4.44135 4.53885 4.56073 4.70416 5.11858 5.32833 5.41049 5.48286 5.61155 5.64467 5.74127 5.84188 5.90843 6.00266 6.15837 6.35547 6.66471 6.91563 7.30838 7.46588 7.71854 8.15767 8.43623 8.64120 8.85807 9.66202 11.03470 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058869 B = 0.007800 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.521915 B = 3588.851513 C = 3747.584781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.152 4.152 5 C 0.509 3.491 6 O -0.538 6.538 7 N -0.614 5.614 8 C 0.134 3.866 9 C -0.002 4.002 10 C -0.604 4.604 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 1.071 2.929 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.287 1.287 18 C 0.105 3.895 19 H 0.061 0.939 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.268 0.732 29 H 0.071 0.929 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 12.871 -3.209 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.192 4.192 5 C 0.296 3.704 6 O -0.415 6.415 7 N -0.347 5.347 8 C 0.014 3.986 9 C -0.040 4.040 10 C -0.642 4.642 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.546 5.546 14 Si 0.899 3.101 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.214 1.214 18 C -0.019 4.019 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.119 0.881 23 H 0.114 0.886 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.030 0.970 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.982 11.183 -2.716 12.970 hybrid contribution -0.529 1.420 -0.699 1.669 sum -6.511 12.603 -3.415 14.591 Atomic orbital electron populations 1.21759 0.93415 1.02502 1.02141 1.22157 0.96677 0.99327 0.94264 0.89416 1.22458 0.97305 1.00540 0.98888 1.20806 0.87283 0.79576 0.82729 1.90704 1.40486 1.47550 1.62809 1.48578 1.22696 1.56657 1.06766 1.21638 0.88722 0.96132 0.92087 1.19535 0.97173 0.90591 0.96658 1.21921 1.08941 0.99388 1.33975 0.93111 1.25883 1.00611 0.94041 0.98266 1.70777 1.10636 1.39104 1.34113 0.83515 0.74743 0.76208 0.75614 1.20722 1.21341 1.21400 1.22136 0.87507 0.95673 0.96566 0.92026 0.92102 0.92064 0.88074 0.88648 0.91523 0.90988 0.96996 0.97395 0.92133 0.91124 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.14 37.16 0.34 -0.82 16 2 C -0.11 -1.12 3.75 -88.99 -0.33 -1.45 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.15 -1.97 6.42 -26.74 -0.17 -2.15 16 5 C 0.51 9.78 8.02 -10.86 -0.09 9.70 16 6 O -0.54 -12.83 17.59 5.56 0.10 -12.73 16 7 N -0.61 -11.51 2.93 -172.42 -0.51 -12.01 16 8 C 0.13 2.97 5.87 -4.04 -0.02 2.94 16 9 C 0.00 -0.05 4.61 -27.88 -0.13 -0.17 16 10 C -0.60 -17.70 9.11 -34.44 -0.31 -18.02 16 11 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 13 N -0.91 -28.71 13.65 55.43 0.76 -27.96 16 14 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.10 1.44 6.92 -3.13 -0.02 1.42 16 19 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 22 H 0.10 1.22 7.84 -51.93 -0.41 0.82 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.07 1.69 7.92 -51.93 -0.41 1.28 16 26 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 27 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 28 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 29 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 256.22 15.07 3.86 3.86 Total: -1.00 -34.56 256.22 -6.22 -40.78 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -4.51 Total: -4.46 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.84 Total: -8.17 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.25 Total: -39.97 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.10 Total: -12.73 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.56 -6.22 -40.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062816695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.108 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds