Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.85717 * 2 1 4 4 C 1.54627 * 110.96917 * 236.16313 * 2 1 3 5 5 C 1.51286 * 104.13330 * 216.86728 * 4 2 1 6 6 O 1.21275 * 124.93911 * 196.51851 * 5 4 2 7 7 N 1.34417 * 110.11473 * 16.64836 * 5 4 2 8 8 C 1.46499 * 124.34739 * 180.25325 * 7 5 4 9 9 C 1.53004 * 109.47198 * 269.70156 * 8 7 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.46761 * 111.30398 * 359.97438 * 7 5 4 19 19 H 1.09003 * 109.47055 * 296.21321 * 1 2 3 20 20 H 1.08995 * 109.47351 * 56.21557 * 1 2 3 21 21 H 1.09003 * 109.47216 * 176.21421 * 1 2 3 22 22 H 1.08999 * 110.48533 * 335.75941 * 4 2 1 23 23 H 1.09000 * 110.48539 * 98.40950 * 4 2 1 24 24 H 1.09000 * 109.47602 * 149.70104 * 8 7 5 25 25 H 1.08998 * 109.47492 * 29.70093 * 8 7 5 26 26 H 1.08994 * 109.47074 * 60.00190 * 9 8 7 27 27 H 1.08998 * 109.47285 * 300.00026 * 9 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 29 29 H 1.08997 * 110.24487 * 102.24813 * 18 7 5 30 30 H 1.09001 * 110.24864 * 224.24515 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0833 -0.8040 -1.1993 5 6 3.3115 -1.4933 -0.6468 6 8 4.1906 -1.9898 -1.3187 7 7 3.2851 -1.4778 0.6970 8 6 4.3259 -2.0556 1.5509 9 6 3.9837 -3.5155 1.8550 10 6 5.0547 -4.1101 2.7329 11 1 5.8951 -3.5068 3.0432 12 6 4.9617 -5.4241 3.1399 13 7 3.9386 -6.1588 2.7616 14 14 6.2888 -6.1609 4.2286 15 1 5.9567 -7.5779 4.5237 16 1 7.5968 -6.0939 3.5288 17 1 6.3674 -5.3965 5.4993 18 6 2.0830 -0.8019 1.1989 19 1 -0.3633 0.4539 0.9220 20 1 -0.3634 0.5714 -0.8541 21 1 -0.3634 -1.0254 -0.0679 22 1 1.3505 -1.5361 -1.5385 23 1 2.3593 -0.1336 -2.0132 24 1 4.3840 -1.4942 2.4834 25 1 5.2859 -2.0069 1.0371 26 1 3.9257 -4.0769 0.9226 27 1 3.0237 -3.5643 2.3689 28 1 3.2492 -5.7761 2.1965 29 1 1.3491 -1.5356 1.5322 30 1 2.3422 -0.1286 2.0160 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062816695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -80.407422 kcal Electronic energy + Delta-G solvation = -12501.500379 eV Core-core repulsion = 10294.831161 eV Total energy + Delta-G solvation = -2206.669218 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45186 -37.77621 -36.41581 -34.54300 -31.45505 -29.26505 -27.32946 -25.93310 -23.66778 -21.69880 -20.43189 -19.06570 -17.70740 -17.39596 -16.38744 -15.67210 -15.32309 -15.24107 -14.76716 -14.54854 -14.26604 -13.74958 -13.49538 -13.30023 -12.74462 -12.50996 -12.39185 -12.17407 -11.93642 -11.79919 -11.74273 -11.01392 -10.73978 -10.61333 -9.69888 -8.77811 -6.49225 1.50125 1.52239 1.60104 1.79395 2.08406 2.54934 3.09055 3.37740 3.47335 3.84249 4.10768 4.18271 4.35961 4.54247 4.58364 4.60607 4.69836 4.76074 4.87228 5.04819 5.08453 5.18637 5.23025 5.44463 5.52752 5.89668 6.07539 6.20851 6.44847 7.11434 7.35072 8.62774 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058869 B = 0.007800 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.521915 B = 3588.851513 C = 3747.584781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.111 0.889 4 C -0.140 4.140 5 C 0.490 3.510 6 O -0.598 6.598 7 N -0.620 5.620 8 C 0.146 3.854 9 C 0.007 3.993 10 C -0.623 4.623 11 H 0.059 0.941 12 C -0.039 4.039 13 N -0.934 5.934 14 Si 1.123 2.877 15 H -0.282 1.282 16 H -0.271 1.271 17 H -0.260 1.260 18 C 0.094 3.906 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.052 0.948 22 H 0.112 0.888 23 H 0.118 0.882 24 H 0.091 0.909 25 H 0.051 0.949 26 H -0.031 1.031 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.066 0.934 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 14.713 -2.425 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.129 0.871 4 C -0.179 4.179 5 C 0.280 3.720 6 O -0.480 6.480 7 N -0.352 5.352 8 C 0.024 3.976 9 C -0.031 4.031 10 C -0.661 4.661 11 H 0.077 0.923 12 C -0.237 4.237 13 N -0.571 5.571 14 Si 0.943 3.057 15 H -0.208 1.208 16 H -0.197 1.197 17 H -0.185 1.185 18 C -0.028 4.028 19 H 0.094 0.906 20 H 0.099 0.901 21 H 0.071 0.929 22 H 0.130 0.870 23 H 0.136 0.864 24 H 0.109 0.891 25 H 0.070 0.930 26 H -0.013 1.013 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.609 13.081 -1.926 14.782 hybrid contribution -0.386 0.859 -0.962 1.346 sum -6.995 13.940 -2.888 15.862 Atomic orbital electron populations 1.21759 0.91185 1.02604 1.03864 1.22196 0.98222 0.99318 0.90795 0.87051 1.22504 0.94200 1.00880 1.00362 1.22028 0.88347 0.78923 0.82745 1.90655 1.43150 1.50125 1.64068 1.48711 1.23405 1.56334 1.06772 1.21219 0.89103 0.93691 0.93550 1.19395 0.96314 0.93355 0.94047 1.22385 1.09628 1.00035 1.34018 0.92278 1.27628 1.01933 0.94998 0.99093 1.70925 1.11470 1.39524 1.35194 0.82884 0.72277 0.75616 0.74953 1.20755 1.19672 1.18458 1.22530 0.85420 0.96036 0.98789 0.90588 0.90073 0.92879 0.86987 0.86356 0.89066 0.93001 1.01314 0.98405 0.93891 0.91535 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.14 71.98 0.66 -1.06 16 2 C -0.09 -1.53 3.75 -9.74 -0.04 -1.57 16 3 H 0.11 1.53 8.14 -2.38 -0.02 1.52 16 4 C -0.14 -3.34 6.42 30.59 0.20 -3.14 16 5 C 0.49 18.95 8.02 87.90 0.70 19.65 16 6 O -0.60 -29.68 17.59 -3.01 -0.05 -29.73 16 7 N -0.62 -23.18 2.93 -818.01 -2.40 -25.57 16 8 C 0.15 6.56 5.87 86.38 0.51 7.07 16 9 C 0.01 0.38 4.61 29.85 0.14 0.52 16 10 C -0.62 -37.05 9.11 25.60 0.23 -36.82 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 12 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 13 N -0.93 -60.33 13.65 21.45 0.29 -60.04 16 14 Si 1.12 51.28 29.90 68.60 2.05 53.33 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 C 0.09 2.39 6.92 86.83 0.60 2.99 16 19 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 20 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.05 0.77 8.06 -2.39 -0.02 0.75 16 22 H 0.11 2.47 7.84 -2.39 -0.02 2.46 16 23 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 25 H 0.05 2.51 7.92 -2.39 -0.02 2.49 16 26 H -0.03 -2.01 8.01 -2.39 -0.02 -2.03 16 27 H 0.00 -0.13 8.01 -2.39 -0.02 -0.15 16 28 H 0.25 16.65 7.22 -92.70 -0.67 15.98 16 29 H 0.07 1.75 7.89 -2.39 -0.02 1.73 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.36 256.22 4.55 -73.81 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.20 Total: 2.46 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.46 Total: -14.25 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.11 Total: -85.61 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -78.36 4.55 -73.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062816695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.601 kcal (2) G-P(sol) polarization free energy of solvation -78.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds