Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99639 * 2 1 4 4 C 1.50703 * 109.47109 * 293.95446 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 C 1.46898 * 111.00524 * 123.95179 * 2 1 3 13 13 C 1.50703 * 109.46662 * 66.04769 * 12 2 1 14 14 O 1.20756 * 120.00225 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99810 * 180.02562 * 13 12 2 16 16 C 1.52999 * 117.49818 * 223.62186 * 15 13 12 17 17 C 1.53001 * 117.49927 * 154.99717 * 15 13 12 18 18 H 1.08998 * 109.47452 * 60.00398 * 1 2 3 19 19 H 1.09000 * 109.46497 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46901 * 299.99804 * 1 2 3 21 21 H 1.08992 * 109.47459 * 53.95364 * 3 2 1 22 22 H 1.09004 * 109.47040 * 173.95515 * 3 2 1 23 23 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 24 24 H 1.08988 * 109.47508 * 186.04495 * 12 2 1 25 25 H 1.09000 * 109.46960 * 306.05013 * 12 2 1 26 26 H 1.09003 * 115.55245 * 9.33234 * 15 13 12 27 27 H 1.09000 * 117.49963 * 0.02562 * 16 15 13 28 28 H 1.09007 * 117.49805 * 145.01970 * 16 15 13 29 29 H 1.08995 * 117.50365 * 214.97695 * 17 15 13 30 30 H 1.09004 * 117.49913 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7126 4.0017 -0.6154 8 14 1.5824 4.1870 -3.1381 9 1 0.2704 4.8679 -2.9954 10 1 2.6249 5.1877 -3.4800 11 1 1.4980 3.1713 -4.2181 12 6 1.9956 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 8 1.0075 -2.5815 0.0077 15 6 2.0633 -3.2239 2.0131 16 6 2.6318 -4.5556 1.5188 17 6 1.2349 -4.5039 2.1410 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.5611 1.9274 0.8308 22 1 3.0797 1.3445 0.1082 23 1 2.9871 4.9178 -0.7774 24 1 3.0797 -0.6610 1.1755 25 1 1.5612 -0.3872 2.0628 26 1 2.4851 -2.8042 2.9263 27 1 2.6980 -4.7057 0.4412 28 1 3.4281 -5.0122 2.1068 29 1 1.1122 -4.9265 3.1382 30 1 0.3814 -4.6200 1.4730 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068895664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = -5.317482 kcal Electronic energy + Delta-G solvation = -12311.641123 eV Core-core repulsion = 10108.228049 eV Total energy + Delta-G solvation = -2203.413074 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65197 -36.49333 -35.48296 -32.48775 -28.86548 -27.01973 -24.88757 -22.98671 -22.51193 -20.36206 -19.00236 -16.67890 -16.14732 -15.19083 -14.95690 -14.62255 -14.15934 -13.86025 -13.34486 -12.65142 -12.35426 -11.83291 -11.66480 -11.39854 -11.01506 -10.86570 -10.73931 -10.69195 -10.55608 -10.37763 -9.96673 -9.39560 -8.90594 -8.42582 -7.23179 -6.01747 -4.02472 2.19077 3.33953 3.39699 3.45441 3.83733 4.04716 4.46320 4.73980 4.87131 5.02122 5.15556 5.34520 5.48520 5.49859 5.80839 5.82552 5.93241 5.99031 6.01535 6.28847 6.38680 6.86155 7.24823 7.31528 7.79402 7.92100 8.09834 8.19950 8.54575 9.05447 9.61666 11.09377 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079791 B = 0.006953 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.830662 B = 4026.360174 C = 4148.446128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.010 3.990 13 C 0.382 3.618 14 O -0.438 6.438 15 C -0.219 4.219 16 C -0.151 4.151 17 C -0.156 4.156 18 H 0.073 0.927 19 H 0.057 0.943 20 H 0.007 0.993 21 H -0.008 1.008 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -12.539 6.743 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.119 4.119 13 C 0.256 3.744 14 O -0.310 6.310 15 C -0.239 4.239 16 C -0.188 4.188 17 C -0.193 4.193 18 H 0.092 0.908 19 H 0.076 0.924 20 H 0.026 0.974 21 H 0.010 0.990 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.997 -12.769 5.811 14.064 hybrid contribution -0.287 1.121 0.157 1.168 sum -1.284 -11.648 5.967 13.151 Atomic orbital electron populations 1.22324 0.88331 1.00267 1.00501 1.61975 1.07616 1.17612 1.38268 1.19797 0.95381 0.81249 0.96893 1.21167 1.34686 0.96904 1.01669 0.91757 1.24987 0.95277 0.97303 0.97092 1.69958 1.38503 1.11434 1.34153 0.86472 0.77963 0.79174 0.83689 1.20730 1.21242 1.19723 1.22403 1.02242 0.92191 0.95056 1.23919 0.75797 0.90853 0.83839 1.90326 1.30011 1.81710 1.28988 1.22925 1.07804 0.90685 1.02457 1.22903 0.96999 0.96936 1.01977 1.22918 0.95461 0.98265 1.02650 0.90797 0.92387 0.97448 0.98994 0.95137 0.92938 0.88009 0.92621 0.85954 0.88084 0.88054 0.88197 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.00 60.07 0.54 1.28 16 2 N -0.53 -12.19 4.49 -245.82 -1.10 -13.29 16 3 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.64 8.52 -34.44 -0.29 -14.93 16 5 H 0.06 1.87 7.10 -52.48 -0.37 1.50 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.01 0.18 5.38 -4.98 -0.03 0.16 16 13 C 0.38 6.25 6.61 -29.03 -0.19 6.06 16 14 O -0.44 -8.55 14.41 6.00 0.09 -8.47 16 15 C -0.22 -2.63 6.13 -91.77 -0.56 -3.19 16 16 C -0.15 -1.59 10.14 -26.73 -0.27 -1.87 16 17 C -0.16 -1.64 10.05 -26.73 -0.27 -1.91 16 18 H 0.07 1.68 6.86 -51.93 -0.36 1.32 16 19 H 0.06 1.17 5.83 -51.93 -0.30 0.87 16 20 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 21 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 22 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.10 1.72 7.93 -51.94 -0.41 1.31 16 25 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 26 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.20 7.89 -51.93 -0.41 0.79 16 LS Contribution 257.85 15.07 3.89 3.89 Total: -1.00 -31.90 257.85 -6.97 -38.86 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.36 Total: -3.92 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.19 Total: -7.84 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.37 Total: -39.56 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.90 -6.97 -38.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068895664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.547 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds