Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99639 * 2 1 4 4 C 1.50703 * 109.47109 * 293.95446 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 C 1.46898 * 111.00524 * 123.95179 * 2 1 3 13 13 C 1.50703 * 109.46662 * 66.04769 * 12 2 1 14 14 O 1.20756 * 120.00225 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99810 * 180.02562 * 13 12 2 16 16 C 1.52999 * 117.49818 * 223.62186 * 15 13 12 17 17 C 1.53001 * 117.49927 * 154.99717 * 15 13 12 18 18 H 1.08998 * 109.47452 * 60.00398 * 1 2 3 19 19 H 1.09000 * 109.46497 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46901 * 299.99804 * 1 2 3 21 21 H 1.08992 * 109.47459 * 53.95364 * 3 2 1 22 22 H 1.09004 * 109.47040 * 173.95515 * 3 2 1 23 23 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 24 24 H 1.08988 * 109.47508 * 186.04495 * 12 2 1 25 25 H 1.09000 * 109.46960 * 306.05013 * 12 2 1 26 26 H 1.09003 * 115.55245 * 9.33234 * 15 13 12 27 27 H 1.09000 * 117.49963 * 0.02562 * 16 15 13 28 28 H 1.09007 * 117.49805 * 145.01970 * 16 15 13 29 29 H 1.08995 * 117.50365 * 214.97695 * 17 15 13 30 30 H 1.09004 * 117.49913 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7126 4.0017 -0.6154 8 14 1.5824 4.1870 -3.1381 9 1 0.2704 4.8679 -2.9954 10 1 2.6249 5.1877 -3.4800 11 1 1.4980 3.1713 -4.2181 12 6 1.9956 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 8 1.0075 -2.5815 0.0077 15 6 2.0633 -3.2239 2.0131 16 6 2.6318 -4.5556 1.5188 17 6 1.2349 -4.5039 2.1410 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.5611 1.9274 0.8308 22 1 3.0797 1.3445 0.1082 23 1 2.9871 4.9178 -0.7774 24 1 3.0797 -0.6610 1.1755 25 1 1.5612 -0.3872 2.0628 26 1 2.4851 -2.8042 2.9263 27 1 2.6980 -4.7057 0.4412 28 1 3.4281 -5.0122 2.1068 29 1 1.1122 -4.9265 3.1382 30 1 0.3814 -4.6200 1.4730 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068895664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = -26.671215 kcal Electronic energy + Delta-G solvation = -12312.567090 eV Core-core repulsion = 10108.228049 eV Total energy + Delta-G solvation = -2204.339041 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95569 -37.97972 -36.79778 -34.65173 -30.50994 -28.97482 -26.61365 -24.55854 -23.31149 -22.15912 -20.21985 -18.57678 -17.65360 -16.69680 -16.46326 -16.33051 -15.65130 -15.32246 -15.00689 -14.38522 -13.79341 -13.48493 -13.29705 -12.81679 -12.67388 -12.62805 -12.43337 -12.38005 -11.99413 -11.52194 -11.46216 -11.39145 -10.63805 -10.39019 -9.05655 -8.23010 -6.32731 0.94200 1.39880 1.41223 1.53360 2.38684 2.81534 2.95583 3.09493 3.45195 3.83710 4.02621 4.18199 4.34919 4.37129 4.50521 4.54602 4.64994 4.74207 4.96233 5.05888 5.08315 5.12120 5.22715 5.24289 5.61896 6.00078 6.24245 6.48522 6.73000 6.82423 7.36754 8.88042 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079791 B = 0.006953 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.830662 B = 4026.360174 C = 4148.446128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.549 5.549 3 C 0.207 3.793 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.269 1.269 12 C 0.002 3.998 13 C 0.386 3.614 14 O -0.478 6.478 15 C -0.227 4.227 16 C -0.144 4.144 17 C -0.146 4.146 18 H 0.054 0.946 19 H 0.071 0.929 20 H 0.014 0.986 21 H -0.030 1.030 22 H 0.012 0.988 23 H 0.266 0.734 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -13.461 7.336 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.273 5.273 3 C 0.081 3.919 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.194 1.194 12 C -0.126 4.126 13 C 0.264 3.736 14 O -0.353 6.353 15 C -0.246 4.246 16 C -0.181 4.181 17 C -0.183 4.183 18 H 0.073 0.927 19 H 0.090 0.910 20 H 0.032 0.968 21 H -0.012 1.012 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.168 0.832 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.906 -13.709 6.425 15.167 hybrid contribution -0.299 1.364 0.019 1.396 sum -1.205 -12.345 6.444 13.978 Atomic orbital electron populations 1.22226 0.87657 1.00865 0.99827 1.61847 1.08402 1.15710 1.41330 1.19459 0.94069 0.83120 0.95273 1.21448 1.35117 0.97690 1.02478 0.92569 1.25870 0.94885 0.97851 1.00751 1.70062 1.39118 1.11930 1.36075 0.85384 0.78133 0.78041 0.79072 1.19679 1.20280 1.19399 1.22606 1.02796 0.93186 0.94052 1.24173 0.74594 0.90682 0.84198 1.90317 1.32060 1.82052 1.30877 1.22857 1.09509 0.90232 1.02002 1.23034 0.98134 0.95357 1.01564 1.23038 0.94792 0.96571 1.03933 0.92748 0.91014 0.96795 1.01198 0.96966 0.92510 0.87129 0.90773 0.83165 0.89858 0.84913 0.85022 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.85 9.00 127.69 1.15 3.00 16 2 N -0.55 -25.53 4.49 -931.65 -4.18 -29.72 16 3 C 0.21 11.30 4.72 85.56 0.40 11.70 16 4 C -0.53 -31.19 8.52 25.60 0.22 -30.97 16 5 H 0.06 3.33 7.10 -2.91 -0.02 3.31 16 6 C 0.00 0.27 5.46 84.65 0.46 0.73 16 7 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 8 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.00 0.07 5.38 85.56 0.46 0.53 16 13 C 0.39 12.27 6.61 29.10 0.19 12.47 16 14 O -0.48 -18.60 14.41 -1.44 -0.02 -18.62 16 15 C -0.23 -4.83 6.13 -11.54 -0.07 -4.91 16 16 C -0.14 -2.63 10.14 30.60 0.31 -2.32 16 17 C -0.15 -2.65 10.05 30.60 0.31 -2.34 16 18 H 0.05 2.53 6.86 -2.39 -0.02 2.51 16 19 H 0.07 2.90 5.83 -2.39 -0.01 2.89 16 20 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 21 H -0.03 -1.71 8.12 -2.39 -0.02 -1.73 16 22 H 0.01 0.70 7.93 -2.38 -0.02 0.68 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.11 3.69 7.93 -2.39 -0.02 3.67 16 25 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 26 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.87 7.89 -2.38 -0.02 1.85 16 Total: -1.00 -69.05 257.85 2.65 -66.40 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.11 Total: 2.73 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 3.43 Total: -12.11 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.90 Total: -85.73 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.02 Total: -18.62 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.05 2.65 -66.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068895664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.733 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds