Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46765 * 2 1 4 4 C 1.52993 * 109.47364 * 119.99789 * 2 1 3 5 5 C 1.53004 * 109.47554 * 185.00098 * 4 2 1 6 6 C 1.52995 * 117.52064 * 116.28287 * 5 4 2 7 7 C 1.52995 * 60.00125 * 107.48498 * 6 5 4 8 8 N 1.46504 * 109.47474 * 240.00235 * 2 1 3 9 9 C 1.34776 * 120.00261 * 84.99585 * 8 2 1 10 10 O 1.21687 * 119.99646 * 359.97438 * 9 8 2 11 11 C 1.46369 * 120.00097 * 180.02562 * 9 8 2 12 12 H 1.08002 * 120.00253 * 353.93553 * 11 9 8 13 13 C 1.40048 * 120.00454 * 173.94072 * 11 9 8 14 14 N 1.30675 * 119.99424 * 6.14067 * 13 11 9 15 15 Si 1.86797 * 120.00330 * 186.14746 * 13 11 9 16 16 H 1.48500 * 109.47255 * 94.98228 * 15 13 11 17 17 H 1.48509 * 109.46877 * 214.97955 * 15 13 11 18 18 H 1.48500 * 109.47315 * 334.97903 * 15 13 11 19 19 H 1.08999 * 109.47294 * 60.00395 * 1 2 3 20 20 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47058 * 300.00250 * 1 2 3 22 22 H 1.09001 * 109.47345 * 65.00216 * 4 2 1 23 23 H 1.08999 * 109.47558 * 305.00206 * 4 2 1 24 24 H 1.09000 * 115.54783 * 330.58523 * 5 4 2 25 25 H 1.08999 * 117.50003 * 214.97628 * 6 5 4 26 26 H 1.09006 * 117.49615 * 359.97438 * 6 5 4 27 27 H 1.09005 * 117.49965 * 252.51666 * 7 6 5 28 28 H 1.08998 * 117.51719 * 107.48143 * 7 6 5 29 29 H 0.97000 * 119.99580 * 265.00309 * 8 2 1 30 30 H 0.97003 * 119.99932 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.1702 0.1532 2.4914 7 6 4.2802 -1.3717 2.4335 8 7 2.0184 -0.6906 -1.1962 9 6 2.1471 -0.0182 -2.3572 10 8 1.8572 1.1623 -2.4119 11 6 2.6346 -0.7083 -3.5524 12 1 2.9836 -1.7280 -3.4827 13 6 2.6487 -0.0464 -4.7865 14 7 2.3410 1.2220 -4.8510 15 14 3.1069 -0.9766 -6.3402 16 1 1.8726 -1.4565 -7.0121 17 1 3.8503 -0.0744 -7.2562 18 1 3.9622 -2.1382 -5.9877 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.7518 -1.7715 1.2056 23 1 1.6055 -0.2617 2.1369 24 1 4.0721 -0.5400 0.3517 25 1 5.0755 0.7306 2.3042 26 1 3.4820 0.5811 3.2204 27 1 3.6643 -1.9474 3.1245 28 1 5.2577 -1.7979 2.2080 29 1 2.2491 -1.6317 -1.1526 30 1 2.3511 1.6806 -5.7057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069669709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -33.433137 kcal Electronic energy + Delta-G solvation = -12462.608079 eV Core-core repulsion = 10257.975819 eV Total energy + Delta-G solvation = -2204.632260 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.16369 -36.73294 -34.08360 -32.33154 -29.95352 -27.00141 -26.02475 -22.23090 -21.34949 -20.20233 -19.19627 -17.20843 -15.51004 -15.20869 -14.72461 -14.26232 -13.96858 -12.80940 -12.59233 -12.41308 -12.18515 -11.58392 -11.53891 -11.36851 -11.00351 -10.95457 -10.76726 -10.45131 -10.30934 -10.16115 -9.88247 -9.56938 -8.80918 -7.53954 -7.40786 -6.14657 -4.58595 3.16057 3.23206 3.26703 4.01141 4.14465 4.63791 4.84211 4.97302 5.12957 5.19238 5.56926 5.70761 5.75416 5.82177 5.98032 6.00394 6.07942 6.15725 6.25683 6.33720 6.37263 6.64116 6.81350 6.95788 7.48018 8.01456 8.21159 8.40517 9.07455 9.62996 10.65485 10.85581 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044872 B = 0.008716 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.841132 B = 3211.794294 C = 3493.934880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.075 0.925 4 C -0.092 4.092 5 C -0.142 4.142 6 C -0.184 4.184 7 C -0.187 4.187 8 N -0.760 5.760 9 C 0.556 3.444 10 O -0.582 6.582 11 C -0.548 4.548 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 H 0.061 0.939 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.378 0.622 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -5.261 9.841 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.130 4.130 5 C -0.161 4.161 6 C -0.221 4.221 7 C -0.224 4.224 8 N -0.415 5.415 9 C 0.360 3.640 10 O -0.465 6.465 11 C -0.585 4.585 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.189 1.189 19 H 0.080 0.920 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.210 0.790 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.886 -4.198 9.690 10.597 hybrid contribution 0.333 -0.933 -0.733 1.232 sum 1.219 -5.131 8.956 10.394 Atomic orbital electron populations 1.22181 0.97279 1.00859 1.01403 1.20450 0.92512 0.97486 0.84929 0.90702 1.21472 0.92612 1.00703 0.98245 1.22407 0.95639 1.03558 0.94462 1.22988 1.03148 0.94105 1.01855 1.22928 1.02100 0.94408 1.02971 1.46183 1.72980 1.12688 1.09630 1.18183 0.77831 0.86330 0.81667 1.90589 1.55090 1.16374 1.84400 1.20906 1.45521 1.00055 0.91993 0.91531 1.25697 0.93113 0.94364 0.99981 1.70035 1.35298 1.08851 1.25585 0.86399 0.79002 0.80030 0.81534 1.19862 1.20511 1.18939 0.91965 0.93513 0.93492 0.91725 0.91659 0.86973 0.89212 0.89160 0.89267 0.89229 0.79023 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.48 37.16 0.35 -2.51 16 2 C 0.15 2.95 2.56 -67.93 -0.17 2.77 16 3 H 0.07 1.67 7.58 -51.93 -0.39 1.27 16 4 C -0.09 -1.37 5.03 -26.73 -0.13 -1.51 16 5 C -0.14 -2.13 5.61 -90.62 -0.51 -2.64 16 6 C -0.18 -2.39 10.18 -26.74 -0.27 -2.66 16 7 C -0.19 -2.30 10.25 -26.73 -0.27 -2.57 16 8 N -0.76 -17.00 4.50 -55.22 -0.25 -17.25 16 9 C 0.56 15.88 7.71 -12.99 -0.10 15.78 16 10 O -0.58 -18.93 14.71 5.20 0.08 -18.85 16 11 C -0.55 -15.63 9.53 -35.63 -0.34 -15.97 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 14 N -0.77 -23.34 11.85 55.55 0.66 -22.68 16 15 Si 0.91 20.39 29.56 -169.99 -5.03 15.37 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.86 7.88 -51.93 -0.41 0.46 16 24 H 0.11 1.98 7.69 -51.93 -0.40 1.58 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.38 7.56 8.58 -40.82 -0.35 7.21 16 30 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -33.11 260.70 -6.63 -39.74 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.47 Total: 6.67 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.55 Total: -6.92 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.41 Total: -39.93 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.11 -6.63 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.308 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds