Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46765 * 2 1 4 4 C 1.52993 * 109.47364 * 119.99789 * 2 1 3 5 5 C 1.53004 * 109.47554 * 185.00098 * 4 2 1 6 6 C 1.52995 * 117.52064 * 116.28287 * 5 4 2 7 7 C 1.52995 * 60.00125 * 107.48498 * 6 5 4 8 8 N 1.46504 * 109.47474 * 240.00235 * 2 1 3 9 9 C 1.34776 * 120.00261 * 84.99585 * 8 2 1 10 10 O 1.21687 * 119.99646 * 359.97438 * 9 8 2 11 11 C 1.46369 * 120.00097 * 180.02562 * 9 8 2 12 12 H 1.08002 * 120.00253 * 353.93553 * 11 9 8 13 13 C 1.40048 * 120.00454 * 173.94072 * 11 9 8 14 14 N 1.30675 * 119.99424 * 6.14067 * 13 11 9 15 15 Si 1.86797 * 120.00330 * 186.14746 * 13 11 9 16 16 H 1.48500 * 109.47255 * 94.98228 * 15 13 11 17 17 H 1.48509 * 109.46877 * 214.97955 * 15 13 11 18 18 H 1.48500 * 109.47315 * 334.97903 * 15 13 11 19 19 H 1.08999 * 109.47294 * 60.00395 * 1 2 3 20 20 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47058 * 300.00250 * 1 2 3 22 22 H 1.09001 * 109.47345 * 65.00216 * 4 2 1 23 23 H 1.08999 * 109.47558 * 305.00206 * 4 2 1 24 24 H 1.09000 * 115.54783 * 330.58523 * 5 4 2 25 25 H 1.08999 * 117.50003 * 214.97628 * 6 5 4 26 26 H 1.09006 * 117.49615 * 359.97438 * 6 5 4 27 27 H 1.09005 * 117.49965 * 252.51666 * 7 6 5 28 28 H 1.08998 * 117.51719 * 107.48143 * 7 6 5 29 29 H 0.97000 * 119.99580 * 265.00309 * 8 2 1 30 30 H 0.97003 * 119.99932 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.1702 0.1532 2.4914 7 6 4.2802 -1.3717 2.4335 8 7 2.0184 -0.6906 -1.1962 9 6 2.1471 -0.0182 -2.3572 10 8 1.8572 1.1623 -2.4119 11 6 2.6346 -0.7083 -3.5524 12 1 2.9836 -1.7280 -3.4827 13 6 2.6487 -0.0464 -4.7865 14 7 2.3410 1.2220 -4.8510 15 14 3.1069 -0.9766 -6.3402 16 1 1.8726 -1.4565 -7.0121 17 1 3.8503 -0.0744 -7.2562 18 1 3.9622 -2.1382 -5.9877 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.7518 -1.7715 1.2056 23 1 1.6055 -0.2617 2.1369 24 1 4.0721 -0.5400 0.3517 25 1 5.0755 0.7306 2.3042 26 1 3.4820 0.5811 3.2204 27 1 3.6643 -1.9474 3.1245 28 1 5.2577 -1.7979 2.2080 29 1 2.2491 -1.6317 -1.1526 30 1 2.3511 1.6806 -5.7057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069669709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -56.276831 kcal Electronic energy + Delta-G solvation = -12463.598656 eV Core-core repulsion = 10257.975819 eV Total energy + Delta-G solvation = -2205.622837 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.84208 -38.28976 -35.83322 -34.51072 -31.79777 -28.30739 -28.16609 -23.26840 -23.03900 -21.55969 -20.97014 -19.21537 -17.50901 -16.63856 -16.42151 -15.75838 -15.47617 -14.65066 -14.37985 -14.09548 -13.59904 -13.24225 -13.14537 -12.76905 -12.68363 -12.54969 -12.32378 -12.06650 -12.00806 -11.85728 -11.03411 -10.92234 -10.69713 -9.80153 -9.38637 -8.28093 -6.83033 1.39275 1.40762 1.56408 2.25106 2.50006 2.94987 3.21882 3.63803 3.73764 4.01413 4.12017 4.30412 4.38952 4.57476 4.70162 4.80524 4.87255 4.92319 4.98007 5.07857 5.25792 5.30860 5.33208 5.43294 5.44846 5.92186 6.28743 6.39923 6.88682 7.62687 8.53826 8.71123 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044872 B = 0.008716 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.841132 B = 3211.794294 C = 3493.934880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.035 0.965 4 C -0.076 4.076 5 C -0.173 4.173 6 C -0.184 4.184 7 C -0.162 4.162 8 N -0.746 5.746 9 C 0.540 3.460 10 O -0.634 6.634 11 C -0.577 4.577 12 H 0.085 0.915 13 C 0.028 3.972 14 N -0.824 5.824 15 Si 0.997 3.003 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.248 1.248 19 H 0.017 0.983 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.392 0.608 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -7.479 10.769 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.054 0.946 4 C -0.113 4.113 5 C -0.191 4.191 6 C -0.221 4.221 7 C -0.199 4.199 8 N -0.400 5.400 9 C 0.344 3.656 10 O -0.521 6.521 11 C -0.614 4.614 12 H 0.103 0.897 13 C -0.187 4.187 14 N -0.453 5.453 15 Si 0.816 3.184 16 H -0.188 1.188 17 H -0.198 1.198 18 H -0.172 1.172 19 H 0.036 0.964 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.156 -6.463 10.672 12.530 hybrid contribution 0.257 -0.217 -0.933 0.992 sum 1.414 -6.680 9.739 11.894 Atomic orbital electron populations 1.22096 0.96041 1.01981 1.00842 1.20638 0.93474 0.95896 0.85743 0.94624 1.21343 0.92458 1.01232 0.96287 1.22262 0.95725 1.07161 0.93949 1.23101 1.03115 0.95077 1.00777 1.23016 1.02092 0.93983 1.00797 1.45855 1.71804 1.13128 1.09194 1.18545 0.77593 0.85942 0.83507 1.90541 1.57325 1.18574 1.85666 1.21453 1.46050 1.01039 0.92824 0.89674 1.26978 0.92237 0.95223 1.04271 1.70205 1.36693 1.11307 1.27128 0.85023 0.79120 0.78583 0.75639 1.18782 1.19778 1.17161 0.96396 0.91436 0.90170 0.89851 0.89031 0.90648 0.89565 0.87568 0.87006 0.88648 0.77439 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.48 71.98 0.68 -4.69 16 2 C 0.15 5.75 2.56 44.99 0.12 5.87 16 3 H 0.04 1.66 7.58 -2.39 -0.02 1.64 16 4 C -0.08 -2.08 5.03 30.59 0.15 -1.93 16 5 C -0.17 -4.97 5.61 -10.79 -0.06 -5.03 16 6 C -0.18 -4.42 10.18 30.59 0.31 -4.11 16 7 C -0.16 -3.50 10.25 30.59 0.31 -3.19 16 8 N -0.75 -34.00 4.50 -446.83 -2.01 -36.02 16 9 C 0.54 32.04 7.71 86.36 0.67 32.70 16 10 O -0.63 -43.51 14.71 -4.31 -0.06 -43.57 16 11 C -0.58 -33.47 9.53 24.83 0.24 -33.23 16 12 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 13 C 0.03 1.58 5.49 85.30 0.47 2.04 16 14 N -0.82 -51.65 11.85 21.84 0.26 -51.39 16 15 Si 1.00 41.84 29.56 68.60 2.03 43.86 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 19 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 20 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.09 2.09 7.88 -2.39 -0.02 2.07 16 24 H 0.08 2.73 7.69 -2.39 -0.02 2.71 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.11 2.21 8.03 -2.38 -0.02 2.19 16 27 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.39 15.57 8.58 -92.71 -0.80 14.78 16 30 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -75.64 260.70 3.42 -72.21 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.32 Total: 26.46 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 2.89 Total: -11.56 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.75 Total: -87.40 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.06 Total: -43.57 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.64 3.42 -72.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.938 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds