Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 C 1.52998 * 109.47072 * 175.00012 * 4 2 1 6 6 C 1.52998 * 117.49770 * 243.61732 * 5 4 2 7 7 C 1.52995 * 60.00387 * 252.51330 * 6 5 4 8 8 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 9 9 C 1.34777 * 120.00258 * 275.00436 * 8 2 1 10 10 O 1.21682 * 119.99992 * 359.97438 * 9 8 2 11 11 C 1.46376 * 119.99803 * 180.02562 * 9 8 2 12 12 H 1.07995 * 120.00124 * 359.71785 * 11 9 8 13 13 C 1.40050 * 119.99863 * 180.02562 * 11 9 8 14 14 N 1.30676 * 119.99974 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00158 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47118 * 89.99406 * 15 13 11 17 17 H 1.48499 * 109.47134 * 209.99926 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99547 * 15 13 11 19 19 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 21 21 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 22 22 H 1.08998 * 109.47261 * 295.00245 * 4 2 1 23 23 H 1.09000 * 109.47285 * 54.99999 * 4 2 1 24 24 H 1.08993 * 115.55077 * 29.33170 * 5 4 2 25 25 H 1.09002 * 117.49986 * 0.02562 * 6 5 4 26 26 H 1.09007 * 117.49738 * 145.02220 * 6 5 4 27 27 H 1.09001 * 117.50094 * 252.50870 * 7 6 5 28 28 H 1.08997 * 117.51604 * 107.47820 * 7 6 5 29 29 H 0.96999 * 119.99694 * 94.99826 * 8 2 1 30 30 H 0.96996 * 119.99793 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.1697 0.1512 -2.4928 7 6 4.2802 -1.3735 -2.4322 8 7 2.0183 -0.6905 1.1962 9 6 2.1470 -0.0181 2.3571 10 8 1.8580 1.1626 2.4116 11 6 2.6355 -0.7080 3.5521 12 1 2.8885 -1.7568 3.5047 13 6 2.7687 -0.0094 4.7587 14 7 2.4573 1.2583 4.8175 15 14 3.3914 -0.8899 6.2839 16 1 4.8713 -0.7846 6.3467 17 1 2.7987 -0.2643 7.4933 18 1 2.9991 -2.3209 6.2242 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.7516 -1.7715 -1.2056 23 1 1.6054 -0.2618 -2.1370 24 1 4.0719 -0.5386 -0.3517 25 1 3.4813 0.5776 -3.2225 26 1 5.0749 0.7293 -2.3067 27 1 5.2582 -1.7987 -2.2062 28 1 3.6646 -1.9509 -3.1219 29 1 2.2490 -1.6316 1.1527 30 1 2.5500 1.7422 5.6530 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069669716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -33.371114 kcal Electronic energy + Delta-G solvation = -12465.343759 eV Core-core repulsion = 10260.714188 eV Total energy + Delta-G solvation = -2204.629570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.16232 -36.73110 -34.08354 -32.32642 -29.95193 -27.00064 -26.02345 -22.22901 -21.34969 -20.20130 -19.19356 -17.20543 -15.50882 -15.20673 -14.72631 -14.26081 -13.96804 -12.81375 -12.59234 -12.39702 -12.18369 -11.58691 -11.53351 -11.36771 -11.00302 -10.94884 -10.76460 -10.42644 -10.33207 -10.16793 -9.87904 -9.56751 -8.81359 -7.54021 -7.40630 -6.13597 -4.58905 3.16273 3.23034 3.26447 4.01307 4.14463 4.64187 4.84158 4.97610 5.13118 5.19486 5.56976 5.71015 5.75575 5.82903 5.98121 6.00723 6.08021 6.15750 6.25853 6.34060 6.37266 6.64436 6.81434 6.95800 7.47764 8.01440 8.21321 8.40290 9.07431 9.63210 10.65921 10.86024 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.008825 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.020624 B = 3171.994535 C = 3479.460303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.075 0.925 4 C -0.092 4.092 5 C -0.142 4.142 6 C -0.184 4.184 7 C -0.187 4.187 8 N -0.760 5.760 9 C 0.556 3.444 10 O -0.581 6.581 11 C -0.547 4.547 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 H 0.046 0.954 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.378 0.622 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -5.235 -9.838 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.130 4.130 5 C -0.161 4.161 6 C -0.221 4.221 7 C -0.224 4.224 8 N -0.415 5.415 9 C 0.360 3.640 10 O -0.464 6.464 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.190 1.190 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.210 0.790 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.971 -4.171 -9.686 10.590 hybrid contribution 0.438 -0.906 0.714 1.234 sum 1.409 -5.077 -8.972 10.405 Atomic orbital electron populations 1.22182 0.97290 1.00853 1.01406 1.20450 0.92498 0.97493 0.84934 0.90697 1.21471 0.92618 1.00695 0.98242 1.22407 0.95636 1.03550 0.94466 1.22989 1.03151 0.94125 1.01836 1.22929 1.02095 0.94390 1.02995 1.46180 1.73008 1.12698 1.09614 1.18181 0.77745 0.86371 0.81735 1.90588 1.54799 1.16463 1.84565 1.20907 1.46961 0.97044 0.93490 0.91570 1.25700 0.93363 0.94464 0.99655 1.70026 1.35379 1.08208 1.26192 0.86410 0.79310 0.80242 0.80989 1.19812 1.20507 1.18971 0.93519 0.91964 0.93493 0.91730 0.91662 0.86957 0.89162 0.89216 0.89231 0.89269 0.79034 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.48 37.16 0.35 -2.51 16 2 C 0.15 2.95 2.56 -67.93 -0.17 2.77 16 3 H 0.07 1.67 7.58 -51.93 -0.39 1.28 16 4 C -0.09 -1.38 5.03 -26.73 -0.13 -1.51 16 5 C -0.14 -2.14 5.61 -90.62 -0.51 -2.65 16 6 C -0.18 -2.40 10.18 -26.73 -0.27 -2.67 16 7 C -0.19 -2.30 10.25 -26.73 -0.27 -2.58 16 8 N -0.76 -17.01 4.50 -55.22 -0.25 -17.26 16 9 C 0.56 15.88 7.71 -12.99 -0.10 15.78 16 10 O -0.58 -18.92 14.68 5.21 0.08 -18.84 16 11 C -0.55 -15.61 9.54 -35.63 -0.34 -15.95 16 12 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 13 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 14 N -0.77 -23.36 11.83 55.55 0.66 -22.70 16 15 Si 0.91 20.40 29.56 -169.99 -5.02 15.37 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 20 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.86 7.87 -51.93 -0.41 0.46 16 24 H 0.11 1.98 7.69 -51.93 -0.40 1.58 16 25 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 26 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.38 7.56 8.58 -40.82 -0.35 7.21 16 30 H 0.27 7.36 8.29 -40.82 -0.34 7.03 16 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -33.10 260.65 -6.63 -39.74 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.47 Total: 6.69 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.55 Total: -6.92 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.41 Total: -39.96 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.84 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.10 -6.63 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.365 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds