Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36947 * 120.00172 * 2 1 4 4 H 1.07992 * 120.00221 * 200.41558 * 3 2 1 5 5 C 1.38811 * 119.99305 * 20.41172 * 3 2 1 6 6 N 1.31621 * 120.00628 * 15.01071 * 5 3 2 7 7 Si 1.86804 * 119.99687 * 195.00588 * 5 3 2 8 8 H 1.48503 * 109.47038 * 85.00586 * 7 5 3 9 9 H 1.48507 * 109.47213 * 205.00612 * 7 5 3 10 10 H 1.48494 * 109.47018 * 325.00351 * 7 5 3 11 11 C 1.46494 * 120.00351 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.78438 * 179.52265 * 11 2 1 13 13 C 1.52798 * 109.56201 * 59.28808 * 11 2 1 14 14 C 1.52959 * 109.48797 * 185.79792 * 13 11 2 15 15 C 1.52955 * 109.81824 * 63.46186 * 14 13 11 16 16 C 1.53233 * 109.40585 * 296.40652 * 15 14 13 17 17 C 1.51262 * 108.53695 * 54.62534 * 16 15 14 18 18 O 1.20765 * 120.85023 * 128.62935 * 17 16 15 19 19 H 1.09000 * 109.47196 * 275.15848 * 1 2 3 20 20 H 1.09000 * 109.47200 * 35.16130 * 1 2 3 21 21 H 1.08994 * 109.46581 * 155.15665 * 1 2 3 22 22 H 0.97000 * 120.00054 * 179.97438 * 6 5 3 23 23 H 1.08999 * 109.55221 * 65.72501 * 13 11 2 24 24 H 1.09007 * 109.33290 * 305.73699 * 13 11 2 25 25 H 1.09003 * 109.40804 * 303.35717 * 14 13 11 26 26 H 1.09001 * 109.35509 * 183.53467 * 14 13 11 27 27 H 1.09001 * 109.48259 * 176.41887 * 15 14 13 28 28 H 1.09011 * 109.49167 * 56.38975 * 15 14 13 29 29 H 1.08995 * 109.62279 * 294.90766 * 16 15 14 30 30 H 1.09002 * 109.78209 * 174.43198 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1788 1.2154 -0.3262 5 6 1.5210 2.3503 0.4193 6 7 0.3885 2.2831 1.0867 7 14 2.2822 4.0127 0.0364 8 1 1.8664 4.4465 -1.3217 9 1 1.8229 5.0097 1.0367 10 1 3.7621 3.9036 0.0898 11 6 2.1975 -1.2686 0.0006 12 1 3.2702 -1.0753 -0.0081 13 6 1.8166 -2.0799 -1.2369 14 6 2.4693 -3.4613 -1.1623 15 6 1.9236 -4.2283 0.0433 16 6 2.3136 -3.4960 1.3316 17 6 1.8347 -2.0644 1.2348 18 8 1.1752 -1.5710 2.1180 19 1 -0.3633 0.0924 1.0235 20 1 -0.3633 0.8401 -0.5918 21 1 -0.3632 -0.9325 -0.4317 22 1 -0.0506 3.0968 1.3800 23 1 2.1613 -1.5629 -2.1324 24 1 0.7329 -2.1915 -1.2757 25 1 3.5486 -3.3469 -1.0607 26 1 2.2479 -4.0152 -2.0746 27 1 2.3441 -5.2338 0.0551 28 1 0.8374 -4.2892 -0.0257 29 1 3.3971 -3.5125 1.4484 30 1 1.8455 -3.9815 2.1880 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075547433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = -44.475226 kcal Electronic energy + Delta-G solvation = -13101.700174 eV Core-core repulsion = 10896.589093 eV Total energy + Delta-G solvation = -2205.111081 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84958 -37.56445 -36.49060 -33.36329 -30.79505 -29.16658 -28.00999 -24.97259 -22.88383 -22.19975 -19.69361 -18.80468 -17.26768 -16.49938 -16.37507 -15.70868 -15.43208 -15.19234 -14.56476 -14.01767 -13.95764 -13.65095 -13.05881 -12.83921 -12.65796 -12.43658 -12.37356 -12.11502 -11.96887 -11.83278 -11.46467 -11.38287 -10.68083 -10.17789 -8.77484 -7.82493 -5.31245 1.24891 1.44229 1.47109 1.55390 2.48751 3.20198 3.41115 3.63097 3.96430 4.11777 4.24138 4.26142 4.42934 4.64805 4.72107 4.74102 4.96911 5.06355 5.16383 5.19802 5.26237 5.31899 5.46351 5.56344 5.60503 5.73036 6.26570 6.85249 7.11592 7.83764 8.27495 9.20673 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056675 B = 0.010888 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.927109 B = 2571.092959 C = 2729.648182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.081 0.919 5 C -0.061 4.061 6 N -0.939 5.939 7 Si 0.976 3.024 8 H -0.281 1.281 9 H -0.299 1.299 10 H -0.264 1.264 11 C 0.115 3.885 12 H 0.099 0.901 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.105 4.105 16 C -0.162 4.162 17 C 0.324 3.676 18 O -0.498 6.498 19 H -0.004 1.004 20 H 0.016 0.984 21 H 0.023 0.977 22 H 0.246 0.754 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.809 -13.118 -5.456 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.323 5.323 3 C -0.400 4.400 4 H 0.099 0.901 5 C -0.255 4.255 6 N -0.586 5.586 7 Si 0.804 3.196 8 H -0.208 1.208 9 H -0.226 1.226 10 H -0.189 1.189 11 C 0.007 3.993 12 H 0.117 0.883 13 C -0.156 4.156 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.201 4.201 17 C 0.200 3.800 18 O -0.373 6.373 19 H 0.014 0.986 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.358 -12.709 -4.937 14.650 hybrid contribution -0.166 1.388 0.336 1.438 sum 5.192 -11.321 -4.601 13.278 Atomic orbital electron populations 1.20382 0.83202 0.95168 0.97075 1.44048 1.01867 1.01123 1.85230 1.19694 0.97648 0.85961 1.36679 0.90123 1.25934 0.98702 1.02307 0.98597 1.70355 1.20570 1.27063 1.40575 0.85151 0.78421 0.79032 0.77020 1.20791 1.22572 1.18885 1.21414 0.97837 0.86155 0.93890 0.88346 1.21865 1.00569 0.96469 0.96657 1.21559 1.01125 0.93390 0.98937 1.21517 1.01058 0.99881 0.91789 1.22416 1.04356 0.92217 1.01106 1.26856 0.75074 0.91315 0.86805 1.90383 1.32016 1.73975 1.40925 0.98604 0.96521 0.95857 0.94502 0.91183 0.93315 0.89885 0.89162 0.87636 0.92727 0.86363 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.29 7.78 127.77 0.99 11.29 16 2 N -0.60 -32.03 2.57 -706.36 -1.82 -33.85 16 3 C -0.27 -15.48 9.62 84.03 0.81 -14.67 16 4 H 0.08 4.33 7.81 -2.91 -0.02 4.31 16 5 C -0.06 -3.59 5.06 84.86 0.43 -3.16 16 6 N -0.94 -60.12 10.67 21.65 0.23 -59.89 16 7 Si 0.98 46.84 29.58 68.60 2.03 48.87 16 8 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.12 4.68 2.85 44.36 0.13 4.81 16 12 H 0.10 3.78 7.87 -2.39 -0.02 3.77 16 13 C -0.12 -3.59 5.29 30.51 0.16 -3.43 16 14 C -0.11 -2.25 5.81 30.57 0.18 -2.08 16 15 C -0.11 -2.07 5.94 30.66 0.18 -1.89 16 16 C -0.16 -4.20 6.17 30.10 0.19 -4.01 16 17 C 0.32 13.03 6.40 29.46 0.19 13.22 16 18 O -0.50 -26.09 16.15 -1.47 -0.02 -26.11 16 19 H 0.00 -0.28 6.91 -2.39 -0.02 -0.30 16 20 H 0.02 0.95 7.22 -2.39 -0.02 0.93 16 21 H 0.02 1.11 6.31 -2.39 -0.02 1.09 16 22 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 23 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 1.63 6.43 -2.38 -0.02 1.61 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.31 243.08 4.78 -70.53 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: 1.11 Total: 0.37 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 3.25 Total: 0.08 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -1.59 Total: -93.74 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.02 Total: -26.11 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -75.31 4.78 -70.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075547433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.051 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds