Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00449 * 2 1 4 4 H 1.07990 * 120.00234 * 203.40342 * 3 2 1 5 5 C 1.38811 * 119.99242 * 23.40245 * 3 2 1 6 6 N 1.31617 * 120.00760 * 15.06270 * 5 3 2 7 7 Si 1.86807 * 119.99624 * 195.06225 * 5 3 2 8 8 H 1.48508 * 109.46855 * 90.00251 * 7 5 3 9 9 H 1.48500 * 109.47325 * 209.99929 * 7 5 3 10 10 H 1.48495 * 109.47101 * 330.00172 * 7 5 3 11 11 C 1.46507 * 120.00159 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.62672 * 179.61969 * 11 2 1 13 13 C 1.53231 * 109.62080 * 300.00199 * 11 2 1 14 14 C 1.52963 * 109.40015 * 174.34017 * 13 11 2 15 15 C 1.52957 * 109.81669 * 296.39931 * 14 13 11 16 16 C 1.53223 * 109.40412 * 63.60049 * 15 14 13 17 17 C 1.51266 * 109.62318 * 59.04254 * 11 2 1 18 18 O 1.20758 * 120.85406 * 8.92057 * 17 11 2 19 19 H 1.08995 * 109.46839 * 275.21829 * 1 2 3 20 20 H 1.09000 * 109.47140 * 35.21821 * 1 2 3 21 21 H 1.08996 * 109.46713 * 155.22059 * 1 2 3 22 22 H 0.97001 * 120.00699 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47898 * 294.31656 * 13 11 2 24 24 H 1.08992 * 109.48921 * 54.35894 * 13 11 2 25 25 H 1.09008 * 109.41346 * 56.50661 * 14 13 11 26 26 H 1.09003 * 109.41133 * 176.28764 * 14 13 11 27 27 H 1.09000 * 109.48018 * 303.61380 * 15 14 13 28 28 H 1.09008 * 109.49133 * 183.58635 * 15 14 13 29 29 H 1.09010 * 109.62414 * 185.65626 * 16 15 14 30 30 H 1.08998 * 109.78921 * 65.18164 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1631 1.2243 -0.3715 5 6 1.5413 2.3385 0.4775 6 7 0.4408 2.2533 1.1943 7 14 2.2846 4.0109 0.1028 8 1 1.7143 4.5331 -1.1651 9 1 1.9730 4.9504 1.2097 10 1 3.7573 3.8785 -0.0344 11 6 2.1976 -1.2688 -0.0006 12 1 3.2697 -1.0725 -0.0073 13 6 1.8299 -2.0758 1.2490 14 6 2.4862 -3.4554 1.1742 15 6 1.9279 -4.2312 -0.0200 16 6 2.2992 -3.5053 -1.3172 17 6 1.8169 -2.0746 -1.2228 18 8 1.1448 -1.5885 -2.1004 19 1 -0.3633 0.0935 1.0234 20 1 -0.3633 0.8396 -0.5926 21 1 -0.3632 -0.9330 -0.4307 22 1 0.0158 3.0587 1.5283 23 1 2.1841 -1.5523 2.1371 24 1 0.7473 -2.1907 1.3022 25 1 3.5638 -3.3382 1.0584 26 1 2.2793 -4.0053 2.0923 27 1 0.8429 -4.2951 0.0632 28 1 2.3514 -5.2356 -0.0313 29 1 1.8195 -3.9983 -2.1629 30 1 3.3809 -3.5189 -1.4511 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075547435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -25.992484 kcal Electronic energy + Delta-G solvation = -13076.648915 eV Core-core repulsion = 10872.339306 eV Total energy + Delta-G solvation = -2204.309609 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33567 -35.94246 -34.80077 -31.42250 -29.36723 -27.63064 -25.85290 -23.27646 -21.34687 -20.84450 -18.24849 -16.74064 -15.51672 -14.88974 -14.78006 -14.09725 -13.96203 -13.66754 -12.82549 -12.57995 -12.43272 -11.91032 -11.43201 -11.07790 -10.90435 -10.79563 -10.69342 -10.41117 -10.26938 -10.24681 -9.97684 -9.79873 -8.82428 -8.39120 -6.69688 -5.68768 -3.15696 2.70846 3.41582 3.47920 3.48625 4.46169 4.74557 5.06046 5.15493 5.19515 5.45610 5.55349 5.63704 5.70064 5.86439 5.99581 6.11008 6.20182 6.31293 6.35082 6.42634 6.77599 6.86527 6.91866 7.47937 7.76627 7.83697 8.24267 8.46470 9.25493 9.88020 10.37442 11.35277 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055513 B = 0.010675 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.268158 B = 2622.223957 C = 2720.346333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.581 5.581 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.134 3.866 12 H 0.093 0.907 13 C -0.125 4.125 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.172 4.172 17 C 0.334 3.666 18 O -0.446 6.446 19 H 0.030 0.970 20 H 0.038 0.962 21 H 0.000 1.000 22 H 0.252 0.748 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -11.170 -0.287 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.301 5.301 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.023 3.977 12 H 0.110 0.890 13 C -0.165 4.165 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.211 4.211 17 C 0.206 3.794 18 O -0.318 6.318 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.018 0.982 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.400 -10.714 -0.680 11.262 hybrid contribution 0.352 0.879 -0.137 0.957 sum 3.753 -9.835 -0.817 10.559 Atomic orbital electron populations 1.20704 0.82278 0.95838 0.98814 1.43702 1.01942 0.99524 1.84952 1.19192 0.98636 0.85546 1.35330 0.91527 1.24988 0.98107 0.98469 0.97843 1.70080 1.21001 1.27273 1.36401 0.86247 0.78639 0.84092 0.77498 1.21477 1.21750 1.20456 1.20940 0.97818 0.87461 0.91441 0.88953 1.22085 1.00840 0.94018 0.99558 1.21603 1.00468 0.96498 0.97462 1.21468 1.01262 0.98377 0.93611 1.22407 1.02928 0.96442 0.99349 1.26194 0.76447 0.88917 0.87829 1.90325 1.29325 1.72754 1.39399 0.95188 0.94326 0.98181 0.93741 0.90936 0.92132 0.91781 0.92026 0.91876 0.91643 0.90539 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.46 7.47 59.85 0.45 4.91 16 2 N -0.58 -15.26 2.58 -174.36 -0.45 -15.71 16 3 C -0.26 -7.32 9.57 -15.06 -0.14 -7.46 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 6 N -0.90 -26.96 10.85 55.49 0.60 -26.36 16 7 Si 0.91 22.41 29.58 -169.99 -5.03 17.38 16 8 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.13 2.78 2.88 -68.68 -0.20 2.58 16 12 H 0.09 1.84 7.87 -51.93 -0.41 1.43 16 13 C -0.13 -2.20 5.31 -26.63 -0.14 -2.34 16 14 C -0.12 -1.58 5.81 -26.77 -0.16 -1.73 16 15 C -0.11 -1.33 5.94 -26.64 -0.16 -1.49 16 16 C -0.17 -2.40 6.17 -27.49 -0.17 -2.57 16 17 C 0.33 6.51 6.09 -28.48 -0.17 6.33 16 18 O -0.45 -10.51 15.92 6.00 0.10 -10.42 16 19 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 20 H 0.04 1.11 7.43 -51.93 -0.39 0.73 16 21 H 0.00 -0.01 6.65 -51.93 -0.35 -0.35 16 22 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 25 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 244.48 15.07 3.68 3.68 Total: -1.00 -31.98 244.48 -6.29 -38.28 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -4.42 Total: -5.14 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.78 Total: -1.73 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.15 Total: -42.07 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.10 Total: -10.42 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.98 -6.29 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075547435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.284 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds