Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00449 * 2 1 4 4 H 1.07990 * 120.00234 * 203.40342 * 3 2 1 5 5 C 1.38811 * 119.99242 * 23.40245 * 3 2 1 6 6 N 1.31617 * 120.00760 * 15.06270 * 5 3 2 7 7 Si 1.86807 * 119.99624 * 195.06225 * 5 3 2 8 8 H 1.48508 * 109.46855 * 90.00251 * 7 5 3 9 9 H 1.48500 * 109.47325 * 209.99929 * 7 5 3 10 10 H 1.48495 * 109.47101 * 330.00172 * 7 5 3 11 11 C 1.46507 * 120.00159 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.62672 * 179.61969 * 11 2 1 13 13 C 1.53231 * 109.62080 * 300.00199 * 11 2 1 14 14 C 1.52963 * 109.40015 * 174.34017 * 13 11 2 15 15 C 1.52957 * 109.81669 * 296.39931 * 14 13 11 16 16 C 1.53223 * 109.40412 * 63.60049 * 15 14 13 17 17 C 1.51266 * 109.62318 * 59.04254 * 11 2 1 18 18 O 1.20758 * 120.85406 * 8.92057 * 17 11 2 19 19 H 1.08995 * 109.46839 * 275.21829 * 1 2 3 20 20 H 1.09000 * 109.47140 * 35.21821 * 1 2 3 21 21 H 1.08996 * 109.46713 * 155.22059 * 1 2 3 22 22 H 0.97001 * 120.00699 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47898 * 294.31656 * 13 11 2 24 24 H 1.08992 * 109.48921 * 54.35894 * 13 11 2 25 25 H 1.09008 * 109.41346 * 56.50661 * 14 13 11 26 26 H 1.09003 * 109.41133 * 176.28764 * 14 13 11 27 27 H 1.09000 * 109.48018 * 303.61380 * 15 14 13 28 28 H 1.09008 * 109.49133 * 183.58635 * 15 14 13 29 29 H 1.09010 * 109.62414 * 185.65626 * 16 15 14 30 30 H 1.08998 * 109.78921 * 65.18164 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1631 1.2243 -0.3715 5 6 1.5413 2.3385 0.4775 6 7 0.4408 2.2533 1.1943 7 14 2.2846 4.0109 0.1028 8 1 1.7143 4.5331 -1.1651 9 1 1.9730 4.9504 1.2097 10 1 3.7573 3.8785 -0.0344 11 6 2.1976 -1.2688 -0.0006 12 1 3.2697 -1.0725 -0.0073 13 6 1.8299 -2.0758 1.2490 14 6 2.4862 -3.4554 1.1742 15 6 1.9279 -4.2312 -0.0200 16 6 2.2992 -3.5053 -1.3172 17 6 1.8169 -2.0746 -1.2228 18 8 1.1448 -1.5885 -2.1004 19 1 -0.3633 0.0935 1.0234 20 1 -0.3633 0.8396 -0.5926 21 1 -0.3632 -0.9330 -0.4307 22 1 0.0158 3.0587 1.5283 23 1 2.1841 -1.5523 2.1371 24 1 0.7473 -2.1907 1.3022 25 1 3.5638 -3.3382 1.0584 26 1 2.2793 -4.0053 2.0923 27 1 0.8429 -4.2951 0.0632 28 1 2.3514 -5.2356 -0.0313 29 1 1.8195 -3.9983 -2.1629 30 1 3.3809 -3.5189 -1.4511 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075547435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -46.535603 kcal Electronic energy + Delta-G solvation = -13077.539731 eV Core-core repulsion = 10872.339306 eV Total energy + Delta-G solvation = -2205.200425 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89798 -37.55551 -36.51145 -33.35914 -30.83237 -29.19473 -28.01327 -24.97949 -22.93288 -22.20222 -19.72784 -18.82256 -17.24156 -16.62793 -16.33403 -15.80482 -15.39866 -15.17167 -14.58850 -14.19520 -13.92580 -13.61657 -12.97045 -12.88239 -12.73725 -12.55915 -12.23982 -12.15998 -12.05633 -11.80213 -11.46587 -11.46056 -10.78310 -10.18852 -8.78291 -7.85908 -5.35976 1.17468 1.42709 1.46301 1.54119 2.46450 3.19993 3.34900 3.60295 3.95708 4.10740 4.22963 4.25558 4.43569 4.64100 4.69297 4.74428 4.92491 5.05814 5.14803 5.19216 5.25236 5.30014 5.45387 5.52313 5.58970 5.59343 6.25761 6.76506 7.09228 7.79749 8.25174 9.16803 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055513 B = 0.010675 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.268158 B = 2622.223957 C = 2720.346333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.193 3.807 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.071 0.929 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.292 1.292 9 H -0.290 1.290 10 H -0.263 1.263 11 C 0.116 3.884 12 H 0.101 0.899 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.159 4.159 17 C 0.335 3.665 18 O -0.497 6.497 19 H 0.010 0.990 20 H 0.002 0.998 21 H 0.013 0.987 22 H 0.249 0.751 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -13.163 -0.365 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.323 5.323 3 C -0.400 4.400 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.582 5.582 7 Si 0.799 3.201 8 H -0.219 1.219 9 H -0.216 1.216 10 H -0.187 1.187 11 C 0.008 3.992 12 H 0.118 0.882 13 C -0.156 4.156 14 C -0.151 4.151 15 C -0.143 4.143 16 C -0.197 4.197 17 C 0.211 3.789 18 O -0.373 6.373 19 H 0.028 0.972 20 H 0.021 0.979 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.245 -12.761 -0.751 13.817 hybrid contribution -0.180 1.443 -0.114 1.458 sum 5.065 -11.319 -0.865 12.430 Atomic orbital electron populations 1.20294 0.83289 0.94827 0.96855 1.43907 1.01753 1.01188 1.85497 1.19563 0.98897 0.86896 1.34658 0.91114 1.25817 0.98849 1.02012 0.98072 1.70229 1.22465 1.27817 1.37663 0.85213 0.78631 0.79535 0.76748 1.21894 1.21647 1.18745 1.21394 0.97748 0.86103 0.93922 0.88169 1.21941 1.00136 0.96598 0.96887 1.21575 1.01069 0.93263 0.99199 1.21516 1.01099 0.99931 0.91704 1.22379 1.04625 0.91708 1.01015 1.26579 0.75029 0.91393 0.85899 1.90319 1.31845 1.74412 1.40710 0.97191 0.97878 0.96832 0.94166 0.92640 0.93914 0.89823 0.89685 0.92709 0.87436 0.89464 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.65 7.47 127.77 0.95 11.61 16 2 N -0.60 -32.30 2.58 -705.54 -1.82 -34.12 16 3 C -0.27 -15.61 9.57 84.03 0.80 -14.80 16 4 H 0.07 3.92 7.84 -2.92 -0.02 3.90 16 5 C -0.05 -3.05 5.06 84.86 0.43 -2.62 16 6 N -0.94 -57.66 10.85 21.65 0.23 -57.43 16 7 Si 0.97 46.74 29.58 68.60 2.03 48.77 16 8 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 11 C 0.12 4.77 2.88 44.50 0.13 4.90 16 12 H 0.10 3.89 7.87 -2.39 -0.02 3.87 16 13 C -0.12 -3.95 5.31 30.66 0.16 -3.79 16 14 C -0.11 -2.46 5.81 30.57 0.18 -2.29 16 15 C -0.11 -2.05 5.94 30.65 0.18 -1.87 16 16 C -0.16 -3.79 6.17 30.10 0.19 -3.61 16 17 C 0.34 12.62 6.09 29.46 0.18 12.80 16 18 O -0.50 -23.51 15.92 -1.44 -0.02 -23.54 16 19 H 0.01 0.58 7.32 -2.39 -0.02 0.56 16 20 H 0.00 0.15 7.43 -2.39 -0.02 0.13 16 21 H 0.01 0.68 6.65 -2.39 -0.02 0.66 16 22 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.04 1.58 7.51 -2.39 -0.02 1.57 16 25 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.85 244.48 4.73 -67.12 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 1.10 Total: -1.14 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 3.20 Total: 0.34 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -1.59 Total: -91.55 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.02 Total: -23.54 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -71.85 4.73 -67.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075547435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.584 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds