Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20767 * 120.00060 * 2 1 4 4 C 1.50702 * 120.00181 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.49626 * 330.06704 * 4 2 1 6 6 C 1.53039 * 109.49837 * 210.00294 * 4 2 1 7 7 C 1.53044 * 109.53646 * 178.68456 * 6 4 2 8 8 C 1.53189 * 109.31349 * 61.36374 * 7 6 4 9 9 N 1.46926 * 108.77454 * 305.36694 * 8 7 6 10 10 C 1.36940 * 120.62842 * 233.58851 * 9 8 7 11 11 H 1.08003 * 120.00249 * 152.05572 * 10 9 8 12 12 C 1.38817 * 119.99956 * 332.05120 * 10 9 8 13 13 N 1.31620 * 119.99780 * 335.34545 * 12 10 9 14 14 Si 1.86794 * 119.99901 * 155.34425 * 12 10 9 15 15 H 1.48502 * 109.47103 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.47138 * 299.99706 * 14 12 10 17 17 H 1.48492 * 109.47406 * 60.00148 * 14 12 10 18 18 C 1.46923 * 118.74097 * 53.85812 * 9 8 7 19 19 H 1.09004 * 109.46996 * 270.00534 * 1 2 3 20 20 H 1.09002 * 109.46899 * 30.00086 * 1 2 3 21 21 H 1.08991 * 109.46698 * 150.00433 * 1 2 3 22 22 H 1.09005 * 109.46084 * 58.66206 * 6 4 2 23 23 H 1.08994 * 109.45956 * 298.70296 * 6 4 2 24 24 H 1.09004 * 109.49423 * 301.41100 * 7 6 4 25 25 H 1.08997 * 109.49382 * 181.31667 * 7 6 4 26 26 H 1.08997 * 109.58310 * 185.57933 * 8 7 6 27 27 H 1.08997 * 109.70309 * 65.21893 * 8 7 6 28 28 H 0.96998 * 120.00099 * 354.24047 * 13 12 10 29 29 H 1.09005 * 109.58626 * 65.93043 * 18 9 8 30 30 H 1.09008 * 109.58620 * 186.35134 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.6714 -2.0652 0.5136 6 6 3.5979 -1.1224 0.7219 7 6 4.3495 -2.4553 0.7517 8 6 4.6324 -2.9097 -0.6836 9 7 3.3651 -2.9480 -1.4259 10 6 2.9792 -4.0821 -2.0894 11 1 1.9299 -4.2897 -2.2390 12 6 3.9367 -4.9650 -2.5697 13 7 5.1521 -4.5363 -2.8368 14 14 3.5002 -6.7615 -2.8368 15 1 4.6884 -7.4883 -3.3520 16 1 3.0712 -7.3635 -1.5489 17 1 2.3941 -6.8609 -3.8226 18 6 2.5225 -1.7446 -1.4479 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3632 -0.8900 -0.5137 22 1 3.4170 -0.7846 1.7423 23 1 4.1965 -0.3798 0.1945 24 1 3.7408 -3.2049 1.2574 25 1 5.2913 -2.3299 1.2860 26 1 5.0787 -3.9040 -0.6708 27 1 5.3156 -2.2086 -1.1631 28 1 5.3563 -3.5898 -2.7783 29 1 3.0362 -0.9486 -1.9870 30 1 1.5761 -1.9701 -1.9396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082644650.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = -33.551413 kcal Electronic energy + Delta-G solvation = -12929.119170 eV Core-core repulsion = 10724.481781 eV Total energy + Delta-G solvation = -2204.637389 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51642 -37.07194 -33.35700 -31.14916 -30.24695 -29.00709 -25.10572 -23.13707 -22.11299 -19.68807 -18.75206 -17.40050 -15.50028 -15.04834 -14.78585 -14.20490 -13.96139 -13.58686 -13.22755 -12.80943 -12.61495 -12.15511 -11.99682 -11.80710 -11.01209 -10.77348 -10.64991 -10.27697 -10.12047 -10.06332 -9.95264 -9.33170 -9.12556 -8.39354 -6.93071 -6.09571 -3.27430 2.21694 3.48058 3.51232 3.69523 4.31208 4.59596 5.15143 5.25405 5.30799 5.36878 5.44766 5.58458 5.62893 5.81587 5.93043 6.06039 6.14309 6.25087 6.43784 6.50084 6.60101 6.67426 6.71232 7.08318 7.19645 7.78755 7.95848 8.54301 9.07052 9.80806 10.25070 11.18657 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051630 B = 0.010284 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.194147 B = 2722.119903 C = 2998.386339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.362 3.638 3 O -0.469 6.469 4 C -0.155 4.155 5 H 0.092 0.908 6 C -0.096 4.096 7 C -0.136 4.136 8 C 0.147 3.853 9 N -0.595 5.595 10 C -0.354 4.354 11 H 0.057 0.943 12 C -0.023 4.023 13 N -0.914 5.914 14 Si 1.066 2.934 15 H -0.285 1.285 16 H -0.293 1.293 17 H -0.292 1.292 18 C 0.165 3.835 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.018 0.982 28 H 0.270 0.730 29 H 0.021 0.979 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 4.475 6.291 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.238 3.762 3 O -0.343 6.343 4 C -0.176 4.176 5 H 0.110 0.890 6 C -0.134 4.134 7 C -0.175 4.175 8 C 0.022 3.978 9 N -0.318 5.318 10 C -0.483 4.483 11 H 0.075 0.925 12 C -0.225 4.225 13 N -0.554 5.554 14 Si 0.895 3.105 15 H -0.211 1.211 16 H -0.220 1.220 17 H -0.219 1.219 18 C 0.038 3.962 19 H 0.109 0.891 20 H 0.098 0.902 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.758 3.508 5.819 8.906 hybrid contribution -0.821 1.472 0.481 1.753 sum -6.579 4.980 6.300 10.381 Atomic orbital electron populations 1.22317 0.95118 1.04587 1.04119 1.24792 0.91695 0.90487 0.69255 1.90345 1.72234 1.35379 1.36368 1.22429 0.97448 0.95516 1.02239 0.89002 1.21286 0.95215 0.98243 0.98615 1.22060 0.99029 0.96319 1.00123 1.21003 0.88046 1.00567 0.88229 1.44109 1.21046 1.09467 1.57223 1.19975 0.93595 0.99798 1.34899 0.92477 1.25891 0.94840 1.05535 0.96271 1.70774 1.22081 1.17912 1.44604 0.83515 0.75237 0.75612 0.76101 1.21059 1.21995 1.21945 1.20763 0.95622 0.89945 0.89864 0.89060 0.90192 0.89489 0.93401 0.91859 0.92289 0.92767 0.90129 0.96404 0.91937 0.96086 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 10.24 36.01 0.37 -1.99 16 2 C 0.36 5.75 6.33 -29.03 -0.18 5.56 16 3 O -0.47 -8.84 16.95 5.99 0.10 -8.73 16 4 C -0.16 -2.74 2.61 -91.43 -0.24 -2.98 16 5 H 0.09 1.55 8.12 -51.93 -0.42 1.12 16 6 C -0.10 -1.73 4.74 -26.69 -0.13 -1.86 16 7 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 8 C 0.15 3.49 4.69 -3.71 -0.02 3.47 16 9 N -0.60 -14.92 2.84 -172.06 -0.49 -15.41 16 10 C -0.35 -9.76 9.49 -15.06 -0.14 -9.90 16 11 H 0.06 1.56 7.94 -52.48 -0.42 1.14 16 12 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 13 N -0.91 -27.33 12.41 55.49 0.69 -26.64 16 14 Si 1.07 24.90 29.98 -169.99 -5.10 19.80 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 18 C 0.17 3.50 5.81 -3.49 -0.02 3.48 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 2.12 6.31 -51.93 -0.33 1.79 16 27 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 28 H 0.27 8.16 6.69 -40.82 -0.27 7.89 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 1.22 7.93 -51.92 -0.41 0.81 16 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -30.95 247.91 -6.09 -37.03 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.42 Total: -2.07 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.60 Total: -7.72 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.20 Total: -42.04 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.10 Total: -8.73 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.10 Total: 19.80 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.95 -6.09 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082644650.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.483 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds