Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20767 * 120.00060 * 2 1 4 4 C 1.50702 * 120.00181 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.49626 * 330.06704 * 4 2 1 6 6 C 1.53039 * 109.49837 * 210.00294 * 4 2 1 7 7 C 1.53044 * 109.53646 * 178.68456 * 6 4 2 8 8 C 1.53189 * 109.31349 * 61.36374 * 7 6 4 9 9 N 1.46926 * 108.77454 * 305.36694 * 8 7 6 10 10 C 1.36940 * 120.62842 * 233.58851 * 9 8 7 11 11 H 1.08003 * 120.00249 * 152.05572 * 10 9 8 12 12 C 1.38817 * 119.99956 * 332.05120 * 10 9 8 13 13 N 1.31620 * 119.99780 * 335.34545 * 12 10 9 14 14 Si 1.86794 * 119.99901 * 155.34425 * 12 10 9 15 15 H 1.48502 * 109.47103 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.47138 * 299.99706 * 14 12 10 17 17 H 1.48492 * 109.47406 * 60.00148 * 14 12 10 18 18 C 1.46923 * 118.74097 * 53.85812 * 9 8 7 19 19 H 1.09004 * 109.46996 * 270.00534 * 1 2 3 20 20 H 1.09002 * 109.46899 * 30.00086 * 1 2 3 21 21 H 1.08991 * 109.46698 * 150.00433 * 1 2 3 22 22 H 1.09005 * 109.46084 * 58.66206 * 6 4 2 23 23 H 1.08994 * 109.45956 * 298.70296 * 6 4 2 24 24 H 1.09004 * 109.49423 * 301.41100 * 7 6 4 25 25 H 1.08997 * 109.49382 * 181.31667 * 7 6 4 26 26 H 1.08997 * 109.58310 * 185.57933 * 8 7 6 27 27 H 1.08997 * 109.70309 * 65.21893 * 8 7 6 28 28 H 0.96998 * 120.00099 * 354.24047 * 13 12 10 29 29 H 1.09005 * 109.58626 * 65.93043 * 18 9 8 30 30 H 1.09008 * 109.58620 * 186.35134 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.6714 -2.0652 0.5136 6 6 3.5979 -1.1224 0.7219 7 6 4.3495 -2.4553 0.7517 8 6 4.6324 -2.9097 -0.6836 9 7 3.3651 -2.9480 -1.4259 10 6 2.9792 -4.0821 -2.0894 11 1 1.9299 -4.2897 -2.2390 12 6 3.9367 -4.9650 -2.5697 13 7 5.1521 -4.5363 -2.8368 14 14 3.5002 -6.7615 -2.8368 15 1 4.6884 -7.4883 -3.3520 16 1 3.0712 -7.3635 -1.5489 17 1 2.3941 -6.8609 -3.8226 18 6 2.5225 -1.7446 -1.4479 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3632 -0.8900 -0.5137 22 1 3.4170 -0.7846 1.7423 23 1 4.1965 -0.3798 0.1945 24 1 3.7408 -3.2049 1.2574 25 1 5.2913 -2.3299 1.2860 26 1 5.0787 -3.9040 -0.6708 27 1 5.3156 -2.2086 -1.1631 28 1 5.3563 -3.5898 -2.7783 29 1 3.0362 -0.9486 -1.9870 30 1 1.5761 -1.9701 -1.9396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082644650.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = -52.764774 kcal Electronic energy + Delta-G solvation = -12929.952324 eV Core-core repulsion = 10724.481781 eV Total energy + Delta-G solvation = -2205.470543 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.92099 -38.77201 -35.22383 -32.64645 -32.10133 -30.29638 -27.08882 -24.71170 -23.91281 -21.33286 -20.18061 -19.39424 -16.95009 -16.50467 -16.22840 -15.85940 -15.73057 -15.44040 -14.77908 -14.45353 -14.16373 -13.71325 -13.12825 -13.06635 -12.80948 -12.55461 -12.30182 -11.91573 -11.84968 -11.82137 -11.74965 -11.18358 -10.60376 -10.38384 -8.99238 -8.26931 -5.44261 0.95303 1.60426 1.68023 1.86659 2.65386 3.06556 3.23281 3.55862 3.80002 3.97104 4.05878 4.28228 4.36136 4.44658 4.63072 4.66804 4.69473 4.74358 4.89731 5.01025 5.07587 5.11329 5.18677 5.21156 5.44163 5.81908 6.35531 6.54300 6.99773 7.73381 8.18318 8.97834 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051630 B = 0.010284 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.194147 B = 2722.119903 C = 2998.386339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.368 3.632 3 O -0.502 6.502 4 C -0.150 4.150 5 H 0.109 0.891 6 C -0.094 4.094 7 C -0.124 4.124 8 C 0.151 3.849 9 N -0.614 5.614 10 C -0.358 4.358 11 H 0.061 0.939 12 C -0.077 4.077 13 N -0.944 5.944 14 Si 1.118 2.882 15 H -0.295 1.295 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.163 3.837 19 H 0.120 0.880 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.049 0.951 27 H -0.003 1.003 28 H 0.252 0.748 29 H 0.002 0.998 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 4.316 7.603 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.246 3.754 3 O -0.378 6.378 4 C -0.170 4.170 5 H 0.127 0.873 6 C -0.131 4.131 7 C -0.163 4.163 8 C 0.025 3.975 9 N -0.338 5.338 10 C -0.487 4.487 11 H 0.078 0.922 12 C -0.273 4.273 13 N -0.585 5.585 14 Si 0.942 3.058 15 H -0.221 1.221 16 H -0.202 1.202 17 H -0.199 1.199 18 C 0.037 3.963 19 H 0.138 0.862 20 H 0.107 0.893 21 H 0.118 0.882 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.873 3.375 7.150 11.158 hybrid contribution -0.177 1.586 0.053 1.597 sum -8.050 4.962 7.203 11.887 Atomic orbital electron populations 1.22304 0.90962 1.05688 1.06235 1.25089 0.93711 0.88810 0.67789 1.90352 1.73369 1.36106 1.38015 1.22335 0.97958 0.97344 0.99412 0.87329 1.21260 0.95036 0.96811 1.00034 1.21915 1.00474 0.97057 0.96822 1.20881 0.87310 0.98378 0.90896 1.44360 1.21711 1.10205 1.57504 1.20294 0.93767 1.00531 1.34118 0.92166 1.27324 0.94489 1.09382 0.96146 1.70905 1.23458 1.16703 1.47467 0.82825 0.75109 0.70829 0.77056 1.22117 1.20200 1.19914 1.20831 0.94956 0.88017 0.92508 0.86198 0.89260 0.88213 0.90616 0.93659 0.91750 0.90728 0.93284 0.98497 0.93813 0.98050 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.73 10.24 71.24 0.73 -3.00 16 2 C 0.37 10.75 6.33 29.10 0.18 10.93 16 3 O -0.50 -18.10 16.95 -1.47 -0.02 -18.13 16 4 C -0.15 -4.97 2.61 -11.32 -0.03 -5.00 16 5 H 0.11 3.29 8.12 -2.39 -0.02 3.27 16 6 C -0.09 -3.22 4.74 30.62 0.15 -3.08 16 7 C -0.12 -4.63 6.08 30.67 0.19 -4.44 16 8 C 0.15 7.32 4.69 86.36 0.40 7.72 16 9 N -0.61 -30.99 2.84 -698.26 -1.99 -32.98 16 10 C -0.36 -19.74 9.49 84.03 0.80 -18.95 16 11 H 0.06 3.23 7.94 -2.91 -0.02 3.21 16 12 C -0.08 -4.38 4.69 84.86 0.40 -3.98 16 13 N -0.94 -58.07 12.41 21.65 0.27 -57.80 16 14 Si 1.12 50.06 29.98 68.60 2.06 52.11 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 C 0.16 6.83 5.81 86.51 0.50 7.34 16 19 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 22 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16 23 H 0.04 1.71 7.90 -2.39 -0.02 1.70 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 2.66 6.31 -2.39 -0.02 2.64 16 27 H 0.00 -0.15 7.85 -2.39 -0.02 -0.17 16 28 H 0.25 15.97 6.69 -92.71 -0.62 15.35 16 29 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.07 2.69 7.93 -2.38 -0.02 2.68 16 Total: -1.00 -67.78 247.91 4.88 -62.90 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.25 Total: 6.34 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 3.32 Total: -12.46 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.72 Total: -90.77 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.02 Total: -18.13 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.06 Total: 52.11 kcal Total: -67.78 4.88 -62.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082644650.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds