Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20756 * 119.99993 * 2 1 4 4 C 1.50698 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.53035 * 109.45969 * 154.99913 * 4 2 1 6 6 C 1.53197 * 109.31441 * 181.38566 * 5 4 2 7 7 N 1.46936 * 108.88860 * 305.29327 * 6 5 4 8 8 C 1.36935 * 120.62903 * 233.67990 * 7 6 5 9 9 H 1.08004 * 119.99817 * 27.39183 * 8 7 6 10 10 C 1.38804 * 120.00238 * 207.39383 * 8 7 6 11 11 N 1.31624 * 120.00025 * 17.25587 * 10 8 7 12 12 Si 1.86801 * 120.00311 * 197.25673 * 10 8 7 13 13 H 1.48505 * 109.47002 * 90.00337 * 12 10 8 14 14 H 1.48506 * 109.47209 * 209.99842 * 12 10 8 15 15 H 1.48497 * 109.47373 * 330.00036 * 12 10 8 16 16 C 1.47199 * 118.55490 * 53.53522 * 7 6 5 17 17 C 1.53048 * 109.45714 * 275.06656 * 4 2 1 18 18 H 1.09000 * 109.47035 * 239.99589 * 1 2 3 19 19 H 1.08995 * 109.47250 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46939 * 119.99417 * 1 2 3 21 21 H 1.09002 * 109.45126 * 35.03115 * 4 2 1 22 22 H 1.08994 * 109.50151 * 61.43408 * 5 4 2 23 23 H 1.09002 * 109.52726 * 301.34854 * 5 4 2 24 24 H 1.08995 * 109.58688 * 65.14877 * 6 5 4 25 25 H 1.08992 * 109.59155 * 185.43629 * 6 5 4 26 26 H 0.96996 * 120.00327 * 179.97438 * 11 10 8 27 27 H 1.09001 * 109.53355 * 186.67382 * 16 7 6 28 28 H 1.09002 * 109.67913 * 66.37170 * 16 7 6 29 29 H 1.08997 * 109.49500 * 298.56267 * 17 4 2 30 30 H 1.08993 * 109.49476 * 58.63126 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.6480 -1.0925 -0.6103 6 6 4.3980 -2.4279 -0.6410 7 7 4.4180 -2.9935 0.7150 8 6 5.6004 -3.3595 1.3008 9 1 6.5190 -2.8682 1.0160 10 6 5.6183 -4.3620 2.2607 11 7 4.5980 -5.1862 2.3706 12 14 7.0903 -4.5413 3.3967 13 1 6.8776 -3.7205 4.6159 14 1 7.2480 -5.9670 3.7813 15 1 8.3154 -4.0791 2.6962 16 6 3.1410 -3.1544 1.4292 17 6 2.4051 -1.8110 1.4366 18 1 -0.3633 -0.5139 0.8900 19 1 -0.3633 1.0276 0.0005 20 1 -0.3633 -0.5137 -0.8900 21 1 1.7132 -2.0400 -0.5909 22 1 4.2050 -0.3763 -0.0064 23 1 3.5450 -0.7098 -1.6257 24 1 3.8907 -3.1165 -1.3167 25 1 5.4196 -2.2655 -0.9842 26 1 4.6106 -5.8870 3.0412 27 1 3.3340 -3.4710 2.4542 28 1 2.5300 -3.9029 0.9246 29 1 2.9738 -1.0879 2.0213 30 1 1.4169 -1.9393 1.8782 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082644830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = -30.638594 kcal Electronic energy + Delta-G solvation = -12857.240875 eV Core-core repulsion = 10652.729795 eV Total energy + Delta-G solvation = -2204.511079 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48664 -36.85395 -33.16076 -31.05761 -29.72997 -29.49388 -25.52292 -22.67265 -22.13007 -19.64699 -18.78633 -16.78838 -15.58634 -14.95687 -14.65731 -14.54861 -13.69938 -13.50374 -13.09388 -12.59291 -12.46938 -12.13733 -11.89373 -11.41066 -11.12984 -10.84616 -10.72579 -10.38431 -10.21971 -9.94259 -9.79430 -9.56926 -8.99846 -8.47073 -6.67812 -5.78658 -3.20053 2.25155 3.39192 3.46021 3.47376 4.37023 4.50773 5.16590 5.27793 5.36952 5.39715 5.54287 5.61085 5.63863 5.86967 6.09656 6.12490 6.30081 6.48014 6.52475 6.59661 6.69492 6.82206 7.02290 7.32300 7.62275 7.80488 7.81558 8.45051 9.21452 9.84954 10.41990 11.30284 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062273 B = 0.009336 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.527180 B = 2998.310670 C = 3108.188781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.357 3.643 3 O -0.466 6.466 4 C -0.128 4.128 5 C -0.120 4.120 6 C 0.146 3.854 7 N -0.593 5.593 8 C -0.250 4.250 9 H 0.066 0.934 10 C 0.001 3.999 11 N -0.904 5.904 12 Si 0.903 3.097 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.172 3.828 17 C -0.127 4.127 18 H 0.091 0.909 19 H 0.074 0.926 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.018 0.982 25 H 0.055 0.945 26 H 0.254 0.746 27 H 0.091 0.909 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 5.734 -3.673 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.233 3.767 3 O -0.340 6.340 4 C -0.147 4.147 5 C -0.160 4.160 6 C 0.019 3.981 7 N -0.316 5.316 8 C -0.380 4.380 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.549 5.549 12 Si 0.733 3.267 13 H -0.215 1.215 14 H -0.218 1.218 15 H -0.204 1.204 16 C 0.046 3.954 17 C -0.166 4.166 18 H 0.110 0.890 19 H 0.093 0.907 20 H 0.107 0.893 21 H 0.106 0.894 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.985 6.133 -3.567 9.956 hybrid contribution 0.534 -0.249 0.608 0.846 sum -6.451 5.885 -2.959 9.220 Atomic orbital electron populations 1.22346 0.95311 1.04157 1.04415 1.24921 0.91619 0.90831 0.69336 1.90349 1.72248 1.35353 1.36062 1.21676 0.97521 0.95248 1.00288 1.21923 0.94732 1.00277 0.99025 1.20907 0.97820 0.91367 0.87986 1.44120 1.03537 1.72930 1.11016 1.19226 0.86810 1.13311 1.18656 0.91596 1.25024 0.97689 0.95390 1.01655 1.70024 1.31603 1.17714 1.35583 0.86275 0.82395 0.76812 0.81225 1.21465 1.21760 1.20422 1.20825 0.85274 0.89764 0.99570 1.22158 1.00139 1.01818 0.92492 0.89028 0.90672 0.89250 0.89421 0.91521 0.93153 0.96413 0.92623 0.93648 0.89104 0.96098 0.92254 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.25 10.26 36.01 0.37 -1.88 16 2 C 0.36 5.52 6.38 -29.03 -0.19 5.34 16 3 O -0.47 -8.77 16.85 6.00 0.10 -8.66 16 4 C -0.13 -2.17 2.41 -91.73 -0.22 -2.39 16 5 C -0.12 -2.25 4.87 -26.61 -0.13 -2.38 16 6 C 0.15 3.11 6.51 -3.70 -0.02 3.09 16 7 N -0.59 -15.03 3.01 -172.10 -0.52 -15.55 16 8 C -0.25 -6.96 9.59 -15.06 -0.14 -7.11 16 9 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 10 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 11 N -0.90 -26.15 11.18 55.49 0.62 -25.53 16 12 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.17 4.03 5.33 -3.56 -0.02 4.01 16 17 C -0.13 -2.39 5.34 -26.61 -0.14 -2.53 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 20 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 22 H 0.07 1.37 7.92 -51.93 -0.41 0.96 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 248.89 15.07 3.75 3.75 Total: -1.00 -30.65 248.89 -6.15 -36.80 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.49 Total: -3.72 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.58 Total: -3.91 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.10 Total: -41.08 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.10 Total: -8.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.65 -6.15 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082644830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.160 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds