Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.20758 * 119.99749 * 2 1 4 4 C 1.50692 * 120.00101 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.70304 * 30.90676 * 4 2 1 6 6 C 1.53196 * 109.59016 * 270.55336 * 4 2 1 7 7 C 1.53042 * 109.31492 * 185.57824 * 6 4 2 8 8 C 1.53043 * 109.53781 * 61.36272 * 7 6 4 9 9 C 1.53627 * 109.23947 * 298.50899 * 8 7 6 10 10 N 1.46928 * 108.54412 * 54.86169 * 9 8 7 11 11 C 1.36933 * 120.63589 * 126.36263 * 10 9 8 12 12 H 1.07997 * 119.99890 * 299.64866 * 11 10 9 13 13 C 1.38811 * 120.00010 * 119.36635 * 11 10 9 14 14 N 1.31620 * 120.00041 * 171.37017 * 13 11 10 15 15 Si 1.86805 * 120.00119 * 351.36765 * 13 11 10 16 16 H 1.48502 * 109.46889 * 94.54900 * 15 13 11 17 17 H 1.48495 * 109.47205 * 214.55438 * 15 13 11 18 18 H 1.48502 * 109.46638 * 334.55674 * 15 13 11 19 19 H 1.08996 * 109.47031 * 240.00317 * 1 2 3 20 20 H 1.08998 * 109.46694 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46566 * 120.00250 * 1 2 3 22 22 H 1.09007 * 109.49227 * 305.52953 * 6 4 2 23 23 H 1.08998 * 109.49689 * 65.58743 * 6 4 2 24 24 H 1.08994 * 109.46000 * 181.38024 * 7 6 4 25 25 H 1.09000 * 109.45852 * 301.35627 * 7 6 4 26 26 H 1.08995 * 109.49735 * 58.58531 * 8 7 6 27 27 H 1.09000 * 109.49623 * 178.68922 * 8 7 6 28 28 H 1.08998 * 109.74549 * 295.12173 * 9 8 7 29 29 H 1.09002 * 109.66077 * 174.54565 * 9 8 7 30 30 H 0.96999 * 119.99573 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.6818 -2.0638 -0.5262 6 6 2.5053 -1.7562 1.4440 7 6 3.3890 -3.0057 1.4409 8 6 4.7400 -2.6756 0.8023 9 6 4.5183 -2.2370 -0.6533 10 7 3.5580 -1.1250 -0.6651 11 6 3.8640 0.0546 -1.2895 12 1 4.7167 0.6322 -0.9646 13 6 3.0815 0.5052 -2.3438 14 7 3.2681 1.7130 -2.8326 15 14 1.7637 -0.6025 -3.0690 16 1 0.4585 -0.3056 -2.4259 17 1 1.6622 -0.3598 -4.5305 18 1 2.1230 -2.0230 -2.8269 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3632 -0.5139 -0.8900 22 1 3.0047 -0.9588 1.9946 23 1 1.5520 -1.9853 1.9202 24 1 3.5445 -3.3431 2.4655 25 1 2.9003 -3.7946 0.8690 26 1 5.2183 -1.8697 1.3589 27 1 5.3772 -3.5597 0.8214 28 1 4.1199 -3.0700 -1.2323 29 1 5.4635 -1.9079 -1.0852 30 1 2.7210 2.0279 -3.5691 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645127.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = -11.498899 kcal Electronic energy + Delta-G solvation = -13556.641125 eV Core-core repulsion = 11352.960005 eV Total energy + Delta-G solvation = -2203.681120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.02242 -36.52634 -32.91472 -30.99490 -30.77373 -28.88973 -25.21112 -23.07299 -21.81889 -19.49179 -18.77075 -16.69988 -15.30410 -14.87410 -14.32021 -14.17316 -13.78307 -13.21750 -13.12072 -12.72425 -12.58335 -12.14274 -11.53365 -11.29978 -11.19281 -10.73385 -10.65618 -10.44231 -10.27170 -10.10821 -9.80048 -9.54213 -8.63742 -8.02546 -6.36475 -5.86424 -3.53554 3.05330 3.29970 3.43905 3.50881 4.53343 4.81920 5.18740 5.38148 5.44374 5.54980 5.62487 5.77526 5.85761 6.01200 6.07928 6.15782 6.22206 6.30101 6.45185 6.46928 6.60451 6.68683 6.79729 6.82845 7.02744 8.21307 8.66187 8.76996 9.05688 9.73521 10.26148 11.25129 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.019514 C = 0.016142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.284528 B = 1434.545776 C = 1734.231849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.313 3.687 3 O -0.375 6.375 4 C 0.116 3.884 5 H 0.045 0.955 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.138 4.138 9 C 0.149 3.851 10 N -0.598 5.598 11 C -0.249 4.249 12 H 0.068 0.932 13 C 0.055 3.945 14 N -0.891 5.891 15 Si 0.852 3.148 16 H -0.267 1.267 17 H -0.296 1.296 18 H -0.263 1.263 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -9.001 6.448 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.183 3.817 3 O -0.242 6.242 4 C 0.009 3.991 5 H 0.063 0.937 6 C -0.159 4.159 7 C -0.146 4.146 8 C -0.177 4.177 9 C 0.024 3.976 10 N -0.324 5.324 11 C -0.379 4.379 12 H 0.085 0.915 13 C -0.147 4.147 14 N -0.531 5.531 15 Si 0.679 3.321 16 H -0.193 1.193 17 H -0.223 1.223 18 H -0.188 1.188 19 H 0.096 0.904 20 H 0.091 0.909 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.706 -8.257 6.309 11.033 hybrid contribution -0.979 -0.615 -0.556 1.283 sum -4.685 -8.872 5.754 11.566 Atomic orbital electron populations 1.22538 0.96875 1.03817 1.03152 1.24071 0.90290 0.91185 0.76202 1.90499 1.70625 1.33973 1.29103 1.21139 0.90222 0.94907 0.92785 0.93724 1.21827 0.98947 0.98130 0.97041 1.21376 0.96575 0.97165 0.99479 1.22100 0.96226 1.00035 0.99305 1.21153 0.93865 0.89858 0.92696 1.44106 1.13174 1.12955 1.62154 1.18444 1.13958 0.96437 1.09042 0.91458 1.25953 0.97670 0.95333 0.95757 1.69779 1.40529 1.16452 1.26361 0.87245 0.83145 0.82849 0.78816 1.19300 1.22278 1.18780 0.90411 0.90902 0.89951 0.91674 0.92750 0.93043 0.92633 0.92119 0.92964 0.96148 0.91621 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.71 9.80 36.01 0.35 -3.35 16 2 C 0.31 7.11 3.62 -29.03 -0.11 7.01 16 3 O -0.38 -10.27 14.03 6.00 0.08 -10.18 16 4 C 0.12 2.49 2.02 -68.75 -0.14 2.35 16 5 H 0.05 0.94 7.27 -51.93 -0.38 0.56 16 6 C -0.12 -2.11 5.35 -26.61 -0.14 -2.26 16 7 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 8 C -0.14 -2.33 6.10 -26.38 -0.16 -2.49 16 9 C 0.15 3.08 6.54 -3.48 -0.02 3.06 16 10 N -0.60 -14.63 2.14 -165.82 -0.36 -14.98 16 11 C -0.25 -7.25 7.53 -15.06 -0.11 -7.36 16 12 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 13 C 0.06 1.64 3.91 -17.43 -0.07 1.57 16 14 N -0.89 -28.20 13.97 55.49 0.78 -27.42 16 15 Si 0.85 21.76 24.58 -169.99 -4.18 17.58 16 16 H -0.27 -6.27 4.48 56.52 0.25 -6.02 16 17 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 18 H -0.26 -6.56 7.05 56.52 0.40 -6.16 16 19 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 20 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 21 H 0.08 1.47 6.09 -51.93 -0.32 1.15 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 235.03 15.07 3.54 3.54 Total: -1.00 -32.65 235.03 -5.31 -37.96 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.62 Total: -3.18 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.56 Total: -3.32 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.42 Total: -42.41 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.18 Total: 17.58 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.65 -5.31 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645127.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.459 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds