Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.20758 * 119.99749 * 2 1 4 4 C 1.50692 * 120.00101 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.70304 * 30.90676 * 4 2 1 6 6 C 1.53196 * 109.59016 * 270.55336 * 4 2 1 7 7 C 1.53042 * 109.31492 * 185.57824 * 6 4 2 8 8 C 1.53043 * 109.53781 * 61.36272 * 7 6 4 9 9 C 1.53627 * 109.23947 * 298.50899 * 8 7 6 10 10 N 1.46928 * 108.54412 * 54.86169 * 9 8 7 11 11 C 1.36933 * 120.63589 * 126.36263 * 10 9 8 12 12 H 1.07997 * 119.99890 * 299.64866 * 11 10 9 13 13 C 1.38811 * 120.00010 * 119.36635 * 11 10 9 14 14 N 1.31620 * 120.00041 * 171.37017 * 13 11 10 15 15 Si 1.86805 * 120.00119 * 351.36765 * 13 11 10 16 16 H 1.48502 * 109.46889 * 94.54900 * 15 13 11 17 17 H 1.48495 * 109.47205 * 214.55438 * 15 13 11 18 18 H 1.48502 * 109.46638 * 334.55674 * 15 13 11 19 19 H 1.08996 * 109.47031 * 240.00317 * 1 2 3 20 20 H 1.08998 * 109.46694 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46566 * 120.00250 * 1 2 3 22 22 H 1.09007 * 109.49227 * 305.52953 * 6 4 2 23 23 H 1.08998 * 109.49689 * 65.58743 * 6 4 2 24 24 H 1.08994 * 109.46000 * 181.38024 * 7 6 4 25 25 H 1.09000 * 109.45852 * 301.35627 * 7 6 4 26 26 H 1.08995 * 109.49735 * 58.58531 * 8 7 6 27 27 H 1.09000 * 109.49623 * 178.68922 * 8 7 6 28 28 H 1.08998 * 109.74549 * 295.12173 * 9 8 7 29 29 H 1.09002 * 109.66077 * 174.54565 * 9 8 7 30 30 H 0.96999 * 119.99573 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.6818 -2.0638 -0.5262 6 6 2.5053 -1.7562 1.4440 7 6 3.3890 -3.0057 1.4409 8 6 4.7400 -2.6756 0.8023 9 6 4.5183 -2.2370 -0.6533 10 7 3.5580 -1.1250 -0.6651 11 6 3.8640 0.0546 -1.2895 12 1 4.7167 0.6322 -0.9646 13 6 3.0815 0.5052 -2.3438 14 7 3.2681 1.7130 -2.8326 15 14 1.7637 -0.6025 -3.0690 16 1 0.4585 -0.3056 -2.4259 17 1 1.6622 -0.3598 -4.5305 18 1 2.1230 -2.0230 -2.8269 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3632 -0.5139 -0.8900 22 1 3.0047 -0.9588 1.9946 23 1 1.5520 -1.9853 1.9202 24 1 3.5445 -3.3431 2.4655 25 1 2.9003 -3.7946 0.8690 26 1 5.2183 -1.8697 1.3589 27 1 5.3772 -3.5597 0.8214 28 1 4.1199 -3.0700 -1.2323 29 1 5.4635 -1.9079 -1.0852 30 1 2.7210 2.0279 -3.5691 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645127.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = -34.703855 kcal Electronic energy + Delta-G solvation = -13557.647367 eV Core-core repulsion = 11352.960005 eV Total energy + Delta-G solvation = -2204.687362 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.78783 -38.20368 -34.87575 -32.71669 -32.60165 -30.37916 -27.10428 -24.66467 -23.54829 -21.00126 -20.59427 -18.67272 -17.19285 -16.57903 -16.08222 -15.79513 -15.57594 -14.84033 -14.68543 -14.50847 -14.28894 -13.69885 -13.14783 -13.05854 -12.85706 -12.49531 -12.32075 -12.22349 -11.84403 -11.70352 -11.54326 -11.15563 -10.65402 -9.94023 -8.36532 -8.04217 -5.79085 1.16689 1.31999 1.43808 1.54477 2.41584 3.11539 3.24590 3.56110 4.08018 4.16367 4.23728 4.37656 4.40576 4.52595 4.68468 4.73921 4.78259 4.97473 5.05429 5.14171 5.23471 5.28785 5.29837 5.33129 5.60695 6.02742 6.34576 6.97588 7.17481 7.56567 8.13660 9.05669 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.019514 C = 0.016142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.284528 B = 1434.545776 C = 1734.231849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.309 3.691 3 O -0.441 6.441 4 C 0.103 3.897 5 H 0.068 0.932 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.131 4.131 9 C 0.139 3.861 10 N -0.614 5.614 11 C -0.239 4.239 12 H 0.004 0.996 13 C -0.001 4.001 14 N -0.949 5.949 15 Si 0.912 3.088 16 H -0.232 1.232 17 H -0.305 1.305 18 H -0.246 1.246 19 H 0.127 0.873 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.039 0.961 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -12.434 7.706 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.183 3.817 3 O -0.312 6.312 4 C -0.002 4.002 5 H 0.086 0.914 6 C -0.155 4.155 7 C -0.141 4.141 8 C -0.169 4.169 9 C 0.015 3.985 10 N -0.341 5.341 11 C -0.369 4.369 12 H 0.021 0.979 13 C -0.198 4.198 14 N -0.592 5.592 15 Si 0.736 3.264 16 H -0.157 1.157 17 H -0.233 1.233 18 H -0.169 1.169 19 H 0.145 0.855 20 H 0.088 0.912 21 H 0.111 0.889 22 H 0.058 0.942 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.142 -11.745 7.606 15.281 hybrid contribution -0.140 0.450 -0.841 0.964 sum -6.282 -11.294 6.765 14.587 Atomic orbital electron populations 1.22540 0.92717 1.04684 1.05930 1.25033 0.92781 0.90774 0.73142 1.90515 1.72416 1.35936 1.32316 1.21473 0.88502 0.94992 0.95274 0.91431 1.21831 1.01372 0.98332 0.94006 1.21403 0.94785 0.96416 1.01524 1.22013 0.98193 1.00604 0.96140 1.21325 0.92359 0.89054 0.95719 1.44234 1.15031 1.12162 1.62690 1.18025 1.12227 0.97334 1.09343 0.97885 1.26634 1.00591 0.96491 0.96123 1.69969 1.42691 1.19005 1.27537 0.86298 0.81532 0.81242 0.77308 1.15667 1.23326 1.16916 0.85518 0.91209 0.88851 0.94216 0.88604 0.89856 0.90709 0.94171 0.89613 0.94469 0.93725 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.39 9.80 71.24 0.70 -5.69 16 2 C 0.31 13.49 3.62 29.10 0.11 13.60 16 3 O -0.44 -24.69 14.03 -1.44 -0.02 -24.71 16 4 C 0.10 4.12 2.02 44.23 0.09 4.21 16 5 H 0.07 2.45 7.27 -2.39 -0.02 2.44 16 6 C -0.12 -3.63 5.35 30.67 0.16 -3.47 16 7 C -0.10 -2.71 5.88 30.62 0.18 -2.53 16 8 C -0.13 -4.07 6.10 30.82 0.19 -3.88 16 9 C 0.14 5.60 6.54 86.51 0.57 6.17 16 10 N -0.61 -29.84 2.14 -678.54 -1.45 -31.29 16 11 C -0.24 -14.52 7.53 84.03 0.63 -13.89 16 12 H 0.00 0.25 8.06 -2.91 -0.02 0.23 16 13 C 0.00 -0.08 3.91 84.86 0.33 0.25 16 14 N -0.95 -63.14 13.97 21.65 0.30 -62.83 16 15 Si 0.91 44.43 24.58 68.60 1.69 46.12 16 16 H -0.23 -9.88 4.48 99.48 0.45 -9.44 16 17 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 18 H -0.25 -11.15 7.05 99.48 0.70 -10.45 16 19 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 20 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 21 H 0.09 2.81 6.09 -2.39 -0.01 2.80 16 22 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.91 7.93 -2.39 -0.02 1.90 16 30 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -77.00 235.03 4.30 -72.70 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.83 Total: 5.26 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 2.96 Total: -5.24 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -1.15 Total: -94.12 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.02 Total: -24.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.69 Total: 46.12 kcal Total: -77.00 4.30 -72.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645127.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.992 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds