Wall clock time and date at job start Mon Mar 30 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20756 * 119.99774 * 2 1 4 4 C 1.50696 * 119.99824 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.58591 * 329.01483 * 4 2 1 6 6 C 1.53184 * 109.70607 * 89.37791 * 4 2 1 7 7 C 1.53044 * 109.31545 * 174.49422 * 6 4 2 8 8 C 1.53040 * 109.53247 * 298.63124 * 7 6 4 9 9 C 1.53199 * 109.31495 * 61.36570 * 8 7 6 10 10 N 1.46927 * 108.77465 * 305.36655 * 9 8 7 11 11 C 1.36935 * 120.63056 * 233.58613 * 10 9 8 12 12 H 1.07999 * 120.00099 * 217.26499 * 11 10 9 13 13 C 1.38817 * 119.99952 * 37.26387 * 11 10 9 14 14 N 1.31622 * 119.99938 * 11.88351 * 13 11 10 15 15 Si 1.86797 * 119.99955 * 191.88017 * 13 11 10 16 16 H 1.48499 * 109.47329 * 60.00368 * 15 13 11 17 17 H 1.48504 * 109.47006 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47014 * 299.99991 * 15 13 11 19 19 H 1.09004 * 109.47275 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47306 * 300.00069 * 1 2 3 21 21 H 1.09005 * 109.47002 * 60.00056 * 1 2 3 22 22 H 1.09010 * 109.49871 * 294.43960 * 6 4 2 23 23 H 1.08992 * 109.49794 * 54.53583 * 6 4 2 24 24 H 1.09001 * 109.46237 * 178.61455 * 7 6 4 25 25 H 1.09002 * 109.44731 * 58.64247 * 7 6 4 26 26 H 1.09003 * 109.49941 * 301.41501 * 8 7 6 27 27 H 1.08998 * 109.52394 * 181.32855 * 8 7 6 28 28 H 1.08996 * 109.58939 * 185.57241 * 9 8 7 29 29 H 1.09002 * 109.58309 * 65.14729 * 9 8 7 30 30 H 0.96995 * 119.99820 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6807 -2.0620 0.5278 6 6 2.5052 -1.7596 -1.4428 7 6 3.3873 -3.0102 -1.4367 8 6 4.7385 -2.6802 -0.7985 9 6 4.5192 -2.2360 0.6512 10 7 3.5579 -1.1251 0.6651 11 6 3.8650 0.0557 1.2870 12 1 3.1007 0.5984 1.8232 13 6 5.1590 0.5550 1.2281 14 7 6.0295 0.0301 0.3921 15 14 5.6645 1.9719 2.3354 16 1 5.4981 1.5735 3.7563 17 1 7.0869 2.3153 2.0816 18 1 4.8109 3.1527 2.0491 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.5517 -1.9894 -1.9186 23 1 3.0055 -0.9642 -1.9950 24 1 3.5427 -3.3501 -2.4607 25 1 2.8973 -3.7971 -0.8632 26 1 5.2179 -1.8760 -1.3568 27 1 5.3752 -3.5647 -0.8155 28 1 5.4656 -1.9058 1.0794 29 1 4.1236 -3.0689 1.2326 30 1 6.9335 0.3792 0.3507 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645128.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:28 Heat of formation + Delta-G solvation = -18.157545 kcal Electronic energy + Delta-G solvation = -13347.053900 eV Core-core repulsion = 11143.084039 eV Total energy + Delta-G solvation = -2203.969860 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.92707 -36.44846 -32.90639 -30.91672 -29.99256 -28.79859 -25.16817 -22.72551 -21.95281 -19.16479 -18.64007 -16.73117 -15.06575 -14.79258 -14.21047 -14.00667 -13.63296 -13.07575 -12.93030 -12.50466 -12.19571 -11.93160 -11.56630 -11.21143 -10.93470 -10.68805 -10.40432 -10.27909 -10.13326 -9.98660 -9.63744 -9.29312 -8.56750 -8.07434 -6.38398 -5.65261 -3.16370 2.94270 3.48718 3.51523 3.55435 4.60682 4.84234 5.48076 5.53381 5.61257 5.74483 5.79820 5.86370 5.91787 6.07415 6.24544 6.33009 6.42499 6.62341 6.64564 6.82937 6.87688 6.99065 7.04252 7.58651 7.72575 7.93947 8.51575 8.69352 9.32461 9.89481 10.49337 11.41259 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.017812 C = 0.012401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.414172 B = 1571.629580 C = 2257.295454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.332 3.668 3 O -0.409 6.409 4 C 0.121 3.879 5 H 0.048 0.952 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.129 4.129 9 C 0.168 3.832 10 N -0.580 5.580 11 C -0.227 4.227 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.899 5.899 15 Si 0.901 3.099 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.282 1.282 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.092 0.908 29 H -0.001 1.001 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 -4.872 -1.983 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.204 3.796 3 O -0.279 6.279 4 C 0.014 3.986 5 H 0.065 0.935 6 C -0.159 4.159 7 C -0.146 4.146 8 C -0.168 4.168 9 C 0.043 3.957 10 N -0.305 5.305 11 C -0.356 4.356 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.544 5.544 15 Si 0.731 3.269 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.208 1.208 19 H 0.091 0.909 20 H 0.098 0.902 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.017 0.983 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.978 -4.232 -1.999 8.402 hybrid contribution 0.233 0.689 0.341 0.803 sum -6.745 -3.544 -1.658 7.798 Atomic orbital electron populations 1.22283 0.96637 1.03377 1.03427 1.24481 0.90283 0.91339 0.73544 1.90451 1.71026 1.34623 1.31759 1.21087 0.90641 0.93958 0.92881 0.93495 1.21827 0.98422 0.98515 0.97149 1.21404 0.97460 0.96545 0.99150 1.21916 0.94855 0.99829 1.00191 1.20803 0.95068 0.87166 0.92694 1.44098 1.12646 1.12640 1.61090 1.18954 0.94580 0.98464 1.23638 0.92110 1.25187 0.98340 0.97551 0.97839 1.69939 1.04750 1.43195 1.36482 0.86392 0.77093 0.83042 0.80352 1.21154 1.21767 1.20803 0.90903 0.90151 0.90274 0.93464 0.91816 0.93676 0.93260 0.90622 0.94232 0.89028 0.98322 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.92 10.33 36.01 0.37 -2.55 16 2 C 0.33 6.91 5.86 -29.03 -0.17 6.74 16 3 O -0.41 -10.48 14.42 6.00 0.09 -10.40 16 4 C 0.12 2.58 3.15 -68.76 -0.22 2.36 16 5 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 6 C -0.12 -2.30 5.36 -26.61 -0.14 -2.44 16 7 C -0.11 -1.97 5.88 -26.69 -0.16 -2.13 16 8 C -0.13 -2.76 6.08 -26.61 -0.16 -2.92 16 9 C 0.17 4.04 5.63 -3.71 -0.02 4.02 16 10 N -0.58 -14.89 2.94 -166.09 -0.49 -15.38 16 11 C -0.23 -6.47 7.10 -15.06 -0.11 -6.58 16 12 H 0.06 1.78 6.58 -52.49 -0.35 1.44 16 13 C 0.01 0.27 5.02 -17.43 -0.09 0.19 16 14 N -0.90 -26.53 11.14 55.49 0.62 -25.91 16 15 Si 0.90 23.01 29.57 -169.99 -5.03 17.98 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 19 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 20 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.87 7.98 -51.93 -0.41 1.45 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.48 5.92 -51.93 -0.31 2.17 16 29 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 243.76 15.07 3.67 3.67 Total: -1.00 -31.59 243.76 -6.25 -37.84 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.42 Total: -4.49 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.69 Total: -3.30 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.13 Total: -41.30 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.59 -6.25 -37.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645128.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.678 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds