Wall clock time and date at job start Mon Mar 30 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20756 * 119.99774 * 2 1 4 4 C 1.50696 * 119.99824 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.58591 * 329.01483 * 4 2 1 6 6 C 1.53184 * 109.70607 * 89.37791 * 4 2 1 7 7 C 1.53044 * 109.31545 * 174.49422 * 6 4 2 8 8 C 1.53040 * 109.53247 * 298.63124 * 7 6 4 9 9 C 1.53199 * 109.31495 * 61.36570 * 8 7 6 10 10 N 1.46927 * 108.77465 * 305.36655 * 9 8 7 11 11 C 1.36935 * 120.63056 * 233.58613 * 10 9 8 12 12 H 1.07999 * 120.00099 * 217.26499 * 11 10 9 13 13 C 1.38817 * 119.99952 * 37.26387 * 11 10 9 14 14 N 1.31622 * 119.99938 * 11.88351 * 13 11 10 15 15 Si 1.86797 * 119.99955 * 191.88017 * 13 11 10 16 16 H 1.48499 * 109.47329 * 60.00368 * 15 13 11 17 17 H 1.48504 * 109.47006 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47014 * 299.99991 * 15 13 11 19 19 H 1.09004 * 109.47275 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47306 * 300.00069 * 1 2 3 21 21 H 1.09005 * 109.47002 * 60.00056 * 1 2 3 22 22 H 1.09010 * 109.49871 * 294.43960 * 6 4 2 23 23 H 1.08992 * 109.49794 * 54.53583 * 6 4 2 24 24 H 1.09001 * 109.46237 * 178.61455 * 7 6 4 25 25 H 1.09002 * 109.44731 * 58.64247 * 7 6 4 26 26 H 1.09003 * 109.49941 * 301.41501 * 8 7 6 27 27 H 1.08998 * 109.52394 * 181.32855 * 8 7 6 28 28 H 1.08996 * 109.58939 * 185.57241 * 9 8 7 29 29 H 1.09002 * 109.58309 * 65.14729 * 9 8 7 30 30 H 0.96995 * 119.99820 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6807 -2.0620 0.5278 6 6 2.5052 -1.7596 -1.4428 7 6 3.3873 -3.0102 -1.4367 8 6 4.7385 -2.6802 -0.7985 9 6 4.5192 -2.2360 0.6512 10 7 3.5579 -1.1251 0.6651 11 6 3.8650 0.0557 1.2870 12 1 3.1007 0.5984 1.8232 13 6 5.1590 0.5550 1.2281 14 7 6.0295 0.0301 0.3921 15 14 5.6645 1.9719 2.3354 16 1 5.4981 1.5735 3.7563 17 1 7.0869 2.3153 2.0816 18 1 4.8109 3.1527 2.0491 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.5517 -1.9894 -1.9186 23 1 3.0055 -0.9642 -1.9950 24 1 3.5427 -3.3501 -2.4607 25 1 2.8973 -3.7971 -0.8632 26 1 5.2179 -1.8760 -1.3568 27 1 5.3752 -3.5647 -0.8155 28 1 5.4656 -1.9058 1.0794 29 1 4.1236 -3.0689 1.2326 30 1 6.9335 0.3792 0.3507 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645128.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:28 Heat of formation + Delta-G solvation = -38.883708 kcal Electronic energy + Delta-G solvation = -13347.952654 eV Core-core repulsion = 11143.084039 eV Total energy + Delta-G solvation = -2204.868614 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64068 -38.19607 -34.85292 -32.59967 -31.88929 -30.23614 -27.11270 -24.40678 -23.78908 -20.79842 -20.37030 -18.70426 -17.00047 -16.42466 -16.03843 -15.69933 -15.32950 -14.84259 -14.56393 -14.21225 -13.72182 -13.59137 -13.06882 -12.90891 -12.75134 -12.60928 -12.24469 -12.18471 -11.92225 -11.72884 -11.41095 -11.07780 -10.49198 -9.91743 -8.39506 -7.78570 -5.31892 1.33171 1.40678 1.44978 1.49383 2.53485 3.31218 3.39294 3.77980 4.18868 4.25870 4.34729 4.50882 4.56306 4.68819 4.76685 4.88168 4.93094 5.06230 5.16957 5.23391 5.30328 5.39251 5.40943 5.67678 5.71684 5.92754 6.49193 7.01839 7.24745 7.86996 8.40431 9.23964 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.017812 C = 0.012401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.414172 B = 1571.629580 C = 2257.295454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.330 3.670 3 O -0.473 6.473 4 C 0.105 3.895 5 H 0.081 0.919 6 C -0.114 4.114 7 C -0.101 4.101 8 C -0.122 4.122 9 C 0.164 3.836 10 N -0.601 5.601 11 C -0.223 4.223 12 H 0.048 0.952 13 C -0.046 4.046 14 N -0.924 5.924 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.290 1.290 19 H 0.108 0.892 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -6.431 -2.243 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.206 3.794 3 O -0.347 6.347 4 C -0.001 4.001 5 H 0.098 0.902 6 C -0.153 4.153 7 C -0.139 4.139 8 C -0.161 4.161 9 C 0.039 3.961 10 N -0.326 5.326 11 C -0.354 4.354 12 H 0.065 0.935 13 C -0.242 4.242 14 N -0.571 5.571 15 Si 0.782 3.218 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.217 1.217 19 H 0.127 0.873 20 H 0.109 0.891 21 H 0.116 0.884 22 H 0.112 0.888 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.355 -5.823 -2.254 11.247 hybrid contribution 0.855 1.101 0.418 1.455 sum -8.501 -4.721 -1.836 9.896 Atomic orbital electron populations 1.22221 0.91058 1.06255 1.04767 1.25348 0.93311 0.90138 0.70589 1.90444 1.72986 1.36324 1.34921 1.21516 0.88871 0.95521 0.94183 0.90164 1.21783 1.00495 0.97631 0.95441 1.21385 0.95115 0.96690 1.00699 1.21771 0.97267 0.99027 0.98064 1.20764 0.93492 0.87317 0.94509 1.44278 1.14352 1.11979 1.62034 1.18991 0.94173 0.98913 1.23289 0.93477 1.25801 0.98796 0.99970 0.99588 1.70088 1.04506 1.44450 1.38023 0.85575 0.76393 0.80386 0.79447 1.20069 1.21689 1.21666 0.87306 0.89113 0.88378 0.88752 0.95856 0.91215 0.90519 0.94966 0.92160 0.92845 0.96249 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 10.33 71.24 0.74 -3.93 16 2 C 0.33 13.18 5.86 29.10 0.17 13.36 16 3 O -0.47 -24.52 14.42 -1.44 -0.02 -24.54 16 4 C 0.11 4.22 3.15 44.22 0.14 4.36 16 5 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 6 C -0.11 -4.06 5.36 30.67 0.16 -3.90 16 7 C -0.10 -3.35 5.88 30.62 0.18 -3.17 16 8 C -0.12 -5.14 6.08 30.67 0.19 -4.96 16 9 C 0.16 7.90 5.63 86.36 0.49 8.38 16 10 N -0.60 -30.81 2.94 -679.38 -2.00 -32.81 16 11 C -0.22 -12.99 7.10 84.03 0.60 -12.39 16 12 H 0.05 2.83 6.58 -2.91 -0.02 2.82 16 13 C -0.05 -2.76 5.02 84.86 0.43 -2.33 16 14 N -0.92 -56.79 11.14 21.65 0.24 -56.55 16 15 Si 0.95 48.77 29.57 68.60 2.03 50.80 16 16 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 17 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 18 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 19 H 0.11 1.97 7.96 -2.39 -0.02 1.95 16 20 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 21 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 22 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.03 1.61 7.98 -2.39 -0.02 1.59 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.05 2.98 5.92 -2.39 -0.01 2.96 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -72.28 243.76 4.44 -67.84 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.10 Total: -0.16 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 3.09 Total: -4.59 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.76 Total: -89.35 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.02 Total: -24.54 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -72.28 4.44 -67.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645128.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.957 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds