Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 115.54854 * 2 1 4 4 C 1.53068 * 117.51827 * 214.27596 * 2 1 3 5 5 C 1.52991 * 59.98482 * 252.52066 * 4 2 1 6 6 H 1.09007 * 117.50318 * 252.49543 * 5 4 2 7 7 C 1.53000 * 117.49771 * 107.49933 * 5 4 2 8 8 N 1.46504 * 109.47304 * 116.25124 * 7 5 4 9 9 C 1.46496 * 120.00271 * 270.00475 * 8 7 5 10 10 C 1.34777 * 119.99854 * 89.99731 * 8 7 5 11 11 O 1.21693 * 120.00018 * 0.02562 * 10 8 7 12 12 C 1.46377 * 120.00307 * 180.27510 * 10 8 7 13 13 H 1.08001 * 119.99387 * 359.73219 * 12 10 8 14 14 C 1.40043 * 120.00458 * 179.72666 * 12 10 8 15 15 N 1.30674 * 120.00000 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00093 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.47059 * 60.00240 * 16 14 12 18 18 H 1.48504 * 109.47424 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47241 * 300.00117 * 16 14 12 20 20 H 1.08998 * 109.47331 * 274.32518 * 1 2 3 21 21 H 1.09000 * 109.47646 * 34.33420 * 1 2 3 22 22 H 1.09009 * 109.46719 * 154.33181 * 1 2 3 23 23 H 1.09002 * 117.49560 * 145.03392 * 4 2 1 24 24 H 1.09004 * 117.51411 * 0.02562 * 4 2 1 25 25 H 1.08999 * 109.47510 * 356.25383 * 7 5 4 26 26 H 1.08996 * 109.47306 * 236.25283 * 7 5 4 27 27 H 1.09001 * 109.47017 * 269.99772 * 9 8 7 28 28 H 1.08997 * 109.47346 * 29.99460 * 9 8 7 29 29 H 1.09004 * 109.47612 * 149.99559 * 9 8 7 30 30 H 0.96998 * 119.99723 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2372 -1.1217 -0.7645 5 6 2.2364 -1.1206 0.7654 6 1 3.1713 -0.8745 1.2690 7 6 1.3589 -2.1556 1.4722 8 7 2.2060 -3.0711 2.2407 9 6 2.7187 -4.2931 1.6163 10 6 2.5138 -2.7889 3.5221 11 8 2.0876 -1.7740 4.0410 12 6 3.3651 -3.7005 4.2882 13 1 3.7430 -4.6014 3.8278 14 6 3.6896 -3.4045 5.6180 15 7 3.2320 -2.3147 6.1751 16 14 4.7766 -4.5675 6.5953 17 1 6.0952 -4.6943 5.9239 18 1 4.9694 -4.0304 7.9663 19 1 4.1300 -5.9021 6.6723 20 1 -0.3634 0.0775 1.0247 21 1 -0.3634 0.8486 -0.5796 22 1 -0.3633 -0.9264 -0.4452 23 1 3.1724 -0.8760 -1.2676 24 1 1.6124 -1.8596 -1.2679 25 1 0.7936 -2.7199 0.7305 26 1 0.6686 -1.6476 2.1456 27 1 2.0105 -5.1065 1.7743 28 1 2.8490 -4.1275 0.5468 29 1 3.6780 -4.5546 2.0630 30 1 3.4571 -2.1095 7.0961 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082650187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = -18.465135 kcal Electronic energy + Delta-G solvation = -12615.520660 eV Core-core repulsion = 10411.537461 eV Total energy + Delta-G solvation = -2203.983199 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.32692 -36.74422 -33.55278 -32.39887 -28.58536 -27.55475 -25.89237 -24.29493 -21.28045 -19.78298 -18.56563 -16.36900 -15.66669 -15.49578 -14.27980 -14.11970 -13.86409 -12.88593 -12.84373 -12.46020 -12.07897 -11.49653 -11.45678 -11.35850 -11.22048 -11.09971 -10.97904 -10.73717 -10.26566 -10.11469 -9.56538 -9.28676 -8.81928 -7.54046 -7.15628 -6.15973 -4.61464 3.16854 3.21704 3.23477 4.07553 4.17267 4.57725 4.67610 5.06242 5.27190 5.32396 5.58003 5.78862 5.86291 6.00221 6.03989 6.04573 6.11269 6.25235 6.28217 6.48568 6.53581 6.59028 6.62233 6.83836 7.47300 7.69285 8.18549 8.40337 9.05084 9.47878 10.61614 10.80673 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060889 B = 0.008919 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.744114 B = 3138.509837 C = 3381.268833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.158 4.158 3 H 0.097 0.903 4 C -0.184 4.184 5 C -0.146 4.146 6 H 0.103 0.897 7 C 0.159 3.841 8 N -0.648 5.648 9 C 0.103 3.897 10 C 0.556 3.444 11 O -0.576 6.576 12 C -0.545 4.545 13 H 0.071 0.929 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -0.857 -9.799 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.176 4.176 3 H 0.115 0.885 4 C -0.221 4.221 5 C -0.165 4.165 6 H 0.121 0.879 7 C 0.035 3.965 8 N -0.386 5.386 9 C -0.041 4.041 10 C 0.361 3.639 11 O -0.459 6.459 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.629 -0.190 -9.329 9.472 hybrid contribution 0.702 -0.618 0.333 0.993 sum -0.927 -0.808 -8.995 9.079 Atomic orbital electron populations 1.21305 0.93213 1.01181 1.01992 1.22290 0.95210 0.94375 1.05772 0.88497 1.23137 1.01961 1.01697 0.95323 1.23027 1.01908 0.99258 0.92346 0.87878 1.20519 0.92090 0.90079 0.93825 1.47968 1.54581 1.22664 1.13340 1.21367 0.99351 0.87416 0.95975 1.18252 0.80802 0.86343 0.78473 1.90595 1.57274 1.29110 1.68899 1.20991 1.32052 1.08279 0.96824 0.91047 1.25738 0.94928 0.94849 0.97749 1.70019 1.35508 1.21693 1.12467 0.86461 0.80772 0.80946 0.78739 1.19298 1.20567 1.19267 0.91883 0.92816 0.92760 0.89648 0.89301 0.92999 0.90556 0.95232 0.94086 0.91125 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.20 37.15 0.34 -1.27 16 2 C -0.16 -2.40 6.41 -90.59 -0.58 -2.98 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.18 -2.67 9.83 -26.70 -0.26 -2.93 16 5 C -0.15 -2.69 6.01 -90.63 -0.54 -3.23 16 6 H 0.10 2.20 8.14 -51.93 -0.42 1.78 16 7 C 0.16 3.23 4.77 -4.04 -0.02 3.21 16 8 N -0.65 -15.22 2.87 -183.25 -0.53 -15.74 16 9 C 0.10 1.98 10.15 59.84 0.61 2.59 16 10 C 0.56 16.15 7.61 -12.99 -0.10 16.05 16 11 O -0.58 -18.91 14.60 5.20 0.08 -18.84 16 12 C -0.54 -15.54 8.74 -35.63 -0.31 -15.86 16 13 H 0.07 1.86 5.99 -52.49 -0.31 1.54 16 14 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.27 11.83 55.55 0.66 -22.61 16 16 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.68 7.90 -51.92 -0.41 0.27 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.09 1.18 7.94 -51.93 -0.41 0.77 16 25 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 26 H 0.08 1.72 7.05 -51.93 -0.37 1.36 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 30 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 256.08 15.07 3.86 3.86 Total: -1.00 -33.42 256.08 -6.22 -39.64 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.30 Total: 0.51 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.96 Total: -2.06 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.13 Total: -38.36 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.84 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.42 -6.22 -39.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.172 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds