Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55338 * 2 1 4 4 C 1.52999 * 117.49690 * 145.71051 * 2 1 3 5 5 C 1.52998 * 60.00063 * 107.48555 * 4 2 1 6 6 H 1.08999 * 117.52141 * 252.51725 * 5 4 2 7 7 C 1.53002 * 117.50025 * 107.48654 * 5 4 2 8 8 N 1.46499 * 109.47256 * 116.38000 * 7 5 4 9 9 C 1.46505 * 119.99568 * 270.00147 * 8 7 5 10 10 C 1.34771 * 119.99908 * 90.00317 * 8 7 5 11 11 O 1.21688 * 120.00398 * 0.02562 * 10 8 7 12 12 C 1.46373 * 119.99861 * 179.97438 * 10 8 7 13 13 H 1.08000 * 120.00304 * 359.97438 * 12 10 8 14 14 C 1.40050 * 120.00228 * 179.97438 * 12 10 8 15 15 N 1.30668 * 119.99703 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00269 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47158 * 90.00153 * 16 14 12 18 18 H 1.48495 * 109.47097 * 210.00063 * 16 14 12 19 19 H 1.48496 * 109.47153 * 330.00148 * 16 14 12 20 20 H 1.09001 * 109.46801 * 205.66798 * 1 2 3 21 21 H 1.09001 * 109.46998 * 325.66395 * 1 2 3 22 22 H 1.09000 * 109.47050 * 85.66686 * 1 2 3 23 23 H 1.09003 * 117.50034 * 214.97663 * 4 2 1 24 24 H 1.09006 * 117.50186 * 0.02562 * 4 2 1 25 25 H 1.08996 * 109.47490 * 236.38505 * 7 5 4 26 26 H 1.09010 * 109.46823 * 356.38057 * 7 5 4 27 27 H 1.09002 * 109.47008 * 90.00750 * 9 8 7 28 28 H 1.09006 * 109.46512 * 209.99758 * 9 8 7 29 29 H 1.08998 * 109.47368 * 329.99683 * 9 8 7 30 30 H 0.97005 * 120.00476 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1213 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8578 -1.2693 7 6 3.5489 -0.7755 -1.4718 8 7 4.0084 -1.9339 -2.2421 9 6 4.8891 -2.9251 -1.6190 10 6 3.6210 -2.0875 -3.5237 11 8 2.8899 -1.2639 -4.0413 12 6 4.0805 -3.2446 -4.2934 13 1 4.7303 -3.9750 -3.8345 14 6 3.6775 -3.4046 -5.6251 15 7 2.8916 -2.5207 -6.1806 16 14 4.2645 -4.8809 -6.6077 17 1 3.3023 -5.9999 -6.4424 18 1 4.3560 -4.5149 -8.0439 19 1 5.6017 -5.3015 -6.1179 20 1 -0.3633 -0.9263 0.4452 21 1 -0.3633 0.8486 0.5797 22 1 -0.3633 0.0776 -1.0247 23 1 3.1716 -0.8757 1.2680 24 1 1.6112 -1.8593 1.2673 25 1 3.3890 0.0675 -2.1439 26 1 4.3022 -0.5106 -0.7297 27 1 4.2863 -3.7043 -1.1524 28 1 5.5315 -3.3692 -2.3795 29 1 5.5046 -2.4394 -0.8619 30 1 2.6127 -2.6312 -7.1031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082650188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -19.149763 kcal Electronic energy + Delta-G solvation = -12544.732607 eV Core-core repulsion = 10340.719721 eV Total energy + Delta-G solvation = -2204.012886 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.23418 -36.73879 -33.60247 -32.40269 -29.09473 -27.09422 -25.86340 -24.17952 -21.06523 -19.97882 -18.98264 -16.36172 -15.53219 -15.12461 -14.59686 -14.13995 -13.52739 -13.28164 -12.78677 -12.29752 -11.98197 -11.72760 -11.47612 -11.36004 -11.12994 -11.06732 -10.95748 -10.80108 -10.25797 -10.11251 -9.62711 -9.24570 -8.82940 -7.53683 -7.16962 -6.16417 -4.61709 3.15022 3.21800 3.25019 4.07339 4.17335 4.56914 4.65417 5.11006 5.25575 5.36313 5.57960 5.78490 5.84684 6.01481 6.02624 6.05531 6.09927 6.25018 6.28019 6.46654 6.54879 6.58790 6.60838 6.85698 7.47119 7.68970 8.18407 8.40041 9.04915 9.47486 10.61222 10.80322 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053065 B = 0.008957 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.530193 B = 3125.437816 C = 3409.499511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.183 4.183 5 C -0.144 4.144 6 H 0.103 0.897 7 C 0.157 3.843 8 N -0.647 5.647 9 C 0.105 3.895 10 C 0.556 3.444 11 O -0.576 6.576 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 0.340 9.724 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 H 0.117 0.883 4 C -0.220 4.220 5 C -0.164 4.164 6 H 0.122 0.878 7 C 0.032 3.968 8 N -0.385 5.385 9 C -0.040 4.040 10 C 0.361 3.639 11 O -0.458 6.458 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.095 0.856 9.255 9.295 hybrid contribution 0.292 -0.863 -0.324 0.967 sum 0.387 -0.007 8.931 8.939 Atomic orbital electron populations 1.21322 0.93333 1.01104 1.01888 1.22301 0.94998 0.94595 1.05816 0.88274 1.23160 1.02029 1.01463 0.95356 1.23055 1.00190 1.00842 0.92326 0.87842 1.20582 0.91593 0.90793 0.93794 1.47958 1.52784 1.24455 1.13273 1.21373 0.93418 0.91951 0.97251 1.18252 0.80313 0.86882 0.78413 1.90595 1.40154 1.46123 1.68965 1.21028 1.32136 1.08302 0.96648 0.90996 1.25743 0.93394 0.96365 0.97783 1.70026 1.25468 1.31730 1.12441 0.86398 0.79811 0.81800 0.78908 1.19769 1.20469 1.18892 0.92954 0.92764 0.92066 0.89413 0.89589 0.90637 0.92931 0.95194 0.91127 0.94246 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.19 37.16 0.38 -1.26 16 2 C -0.16 -2.41 6.13 -90.62 -0.56 -2.97 16 3 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.18 -2.66 9.82 -26.73 -0.26 -2.93 16 5 C -0.14 -2.67 5.73 -90.62 -0.52 -3.18 16 6 H 0.10 2.23 8.14 -51.93 -0.42 1.80 16 7 C 0.16 3.18 5.73 -4.04 -0.02 3.16 16 8 N -0.65 -15.18 2.87 -183.24 -0.53 -15.71 16 9 C 0.10 2.00 10.19 59.85 0.61 2.61 16 10 C 0.56 16.14 7.61 -12.99 -0.10 16.04 16 11 O -0.58 -18.90 14.60 5.20 0.08 -18.82 16 12 C -0.54 -15.52 8.74 -35.63 -0.31 -15.84 16 13 H 0.07 1.87 5.99 -52.49 -0.31 1.56 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 15 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 16 Si 0.91 20.26 29.56 -169.99 -5.02 15.24 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 20 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 24 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 25 H 0.08 1.70 7.42 -51.93 -0.39 1.32 16 26 H 0.05 0.90 7.63 -51.92 -0.40 0.51 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.38 6.09 -51.93 -0.32 1.07 16 29 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 257.83 15.07 3.89 3.89 Total: -1.00 -33.41 257.83 -6.13 -39.53 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.32 Total: 0.48 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.88 Total: -2.02 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.13 Total: -38.30 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.41 -6.13 -39.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.383 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds