Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55338 * 2 1 4 4 C 1.52999 * 117.49690 * 145.71051 * 2 1 3 5 5 C 1.52998 * 60.00063 * 107.48555 * 4 2 1 6 6 H 1.08999 * 117.52141 * 252.51725 * 5 4 2 7 7 C 1.53002 * 117.50025 * 107.48654 * 5 4 2 8 8 N 1.46499 * 109.47256 * 116.38000 * 7 5 4 9 9 C 1.46505 * 119.99568 * 270.00147 * 8 7 5 10 10 C 1.34771 * 119.99908 * 90.00317 * 8 7 5 11 11 O 1.21688 * 120.00398 * 0.02562 * 10 8 7 12 12 C 1.46373 * 119.99861 * 179.97438 * 10 8 7 13 13 H 1.08000 * 120.00304 * 359.97438 * 12 10 8 14 14 C 1.40050 * 120.00228 * 179.97438 * 12 10 8 15 15 N 1.30668 * 119.99703 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00269 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47158 * 90.00153 * 16 14 12 18 18 H 1.48495 * 109.47097 * 210.00063 * 16 14 12 19 19 H 1.48496 * 109.47153 * 330.00148 * 16 14 12 20 20 H 1.09001 * 109.46801 * 205.66798 * 1 2 3 21 21 H 1.09001 * 109.46998 * 325.66395 * 1 2 3 22 22 H 1.09000 * 109.47050 * 85.66686 * 1 2 3 23 23 H 1.09003 * 117.50034 * 214.97663 * 4 2 1 24 24 H 1.09006 * 117.50186 * 0.02562 * 4 2 1 25 25 H 1.08996 * 109.47490 * 236.38505 * 7 5 4 26 26 H 1.09010 * 109.46823 * 356.38057 * 7 5 4 27 27 H 1.09002 * 109.47008 * 90.00750 * 9 8 7 28 28 H 1.09006 * 109.46512 * 209.99758 * 9 8 7 29 29 H 1.08998 * 109.47368 * 329.99683 * 9 8 7 30 30 H 0.97005 * 120.00476 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1213 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8578 -1.2693 7 6 3.5489 -0.7755 -1.4718 8 7 4.0084 -1.9339 -2.2421 9 6 4.8891 -2.9251 -1.6190 10 6 3.6210 -2.0875 -3.5237 11 8 2.8899 -1.2639 -4.0413 12 6 4.0805 -3.2446 -4.2934 13 1 4.7303 -3.9750 -3.8345 14 6 3.6775 -3.4046 -5.6251 15 7 2.8916 -2.5207 -6.1806 16 14 4.2645 -4.8809 -6.6077 17 1 3.3023 -5.9999 -6.4424 18 1 4.3560 -4.5149 -8.0439 19 1 5.6017 -5.3015 -6.1179 20 1 -0.3633 -0.9263 0.4452 21 1 -0.3633 0.8486 0.5797 22 1 -0.3633 0.0776 -1.0247 23 1 3.1716 -0.8757 1.2680 24 1 1.6112 -1.8593 1.2673 25 1 3.3890 0.0675 -2.1439 26 1 4.3022 -0.5106 -0.7297 27 1 4.2863 -3.7043 -1.1524 28 1 5.5315 -3.3692 -2.3795 29 1 5.5046 -2.4394 -0.8619 30 1 2.6127 -2.6312 -7.1031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082650188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -41.404734 kcal Electronic energy + Delta-G solvation = -12545.697655 eV Core-core repulsion = 10340.719721 eV Total energy + Delta-G solvation = -2204.977934 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96091 -38.40963 -35.53706 -34.58782 -30.54311 -28.72829 -27.69271 -25.95296 -22.50052 -21.33865 -20.84777 -18.38615 -17.62830 -16.64019 -16.20385 -15.99350 -15.12865 -14.80531 -14.14456 -13.99315 -13.52359 -13.33406 -13.15734 -13.06370 -12.91649 -12.73091 -12.36996 -12.26074 -12.11941 -12.01238 -10.98014 -10.89690 -10.58513 -9.76629 -9.06926 -8.28227 -6.84175 1.39151 1.40988 1.56207 2.23991 2.46412 2.76952 3.02038 3.59000 3.87165 3.98254 4.05696 4.33476 4.43932 4.61672 4.73466 4.81571 4.90199 4.90566 4.91961 5.01114 5.07563 5.16281 5.31019 5.37086 5.43782 5.78199 6.15986 6.44923 6.87785 7.43787 8.48753 8.68532 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053065 B = 0.008957 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.530193 B = 3125.437816 C = 3409.499511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.153 4.153 3 H 0.111 0.889 4 C -0.147 4.147 5 C -0.181 4.181 6 H 0.060 0.940 7 C 0.158 3.842 8 N -0.651 5.651 9 C 0.102 3.898 10 C 0.536 3.464 11 O -0.631 6.631 12 C -0.571 4.571 13 H 0.093 0.907 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 0.997 3.003 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.246 1.246 20 H 0.058 0.942 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -0.828 11.541 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.171 4.171 3 H 0.129 0.871 4 C -0.184 4.184 5 C -0.201 4.201 6 H 0.079 0.921 7 C 0.035 3.965 8 N -0.387 5.387 9 C -0.041 4.041 10 C 0.342 3.658 11 O -0.519 6.519 12 C -0.608 4.608 13 H 0.111 0.889 14 C -0.189 4.189 15 N -0.453 5.453 16 Si 0.816 3.184 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.169 1.169 20 H 0.077 0.923 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.131 0.869 24 H 0.117 0.883 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.320 -0.319 11.143 11.225 hybrid contribution -0.089 -0.445 -0.796 0.917 sum 1.230 -0.764 10.347 10.448 Atomic orbital electron populations 1.21352 0.92487 1.02719 1.01155 1.22484 0.95849 0.94719 1.04070 0.87110 1.23251 1.02911 1.00395 0.91800 1.22710 0.99556 1.02762 0.95035 0.92123 1.20688 0.93739 0.88541 0.93549 1.47851 1.52678 1.25893 1.12229 1.21558 0.93156 0.91658 0.97735 1.18682 0.80014 0.86756 0.80331 1.90539 1.42510 1.47834 1.70968 1.21570 1.32769 1.08797 0.97631 0.88892 1.27042 0.92883 0.99996 0.98946 1.70209 1.27227 1.34677 1.13216 0.85032 0.79951 0.76665 0.76738 1.18706 1.19817 1.16916 0.92299 0.90011 0.94200 0.86902 0.88264 0.94349 0.88986 0.94184 0.91884 0.90157 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 10.19 71.98 0.73 -2.43 16 2 C -0.15 -4.41 6.13 -10.79 -0.07 -4.48 16 3 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 4 C -0.15 -3.81 9.82 30.59 0.30 -3.51 16 5 C -0.18 -6.67 5.73 -10.79 -0.06 -6.73 16 6 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 7 C 0.16 6.45 5.73 86.38 0.50 6.94 16 8 N -0.65 -30.79 2.87 -851.87 -2.45 -33.24 16 9 C 0.10 3.71 10.19 127.77 1.30 5.01 16 10 C 0.54 32.33 7.61 86.36 0.66 32.98 16 11 O -0.63 -43.89 14.60 -4.31 -0.06 -43.95 16 12 C -0.57 -33.12 8.74 24.83 0.22 -32.90 16 13 H 0.09 4.80 5.99 -2.91 -0.02 4.78 16 14 C 0.03 1.48 5.50 85.31 0.47 1.95 16 15 N -0.82 -51.72 11.83 21.84 0.26 -51.47 16 16 Si 1.00 41.60 29.56 68.60 2.03 43.63 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 20 H 0.06 1.45 7.90 -2.39 -0.02 1.43 16 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.11 2.41 8.03 -2.39 -0.02 2.39 16 24 H 0.10 2.35 8.05 -2.38 -0.02 2.33 16 25 H 0.04 1.81 7.42 -2.39 -0.02 1.79 16 26 H 0.09 2.94 7.63 -2.38 -0.02 2.92 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 2.37 6.09 -2.38 -0.01 2.36 16 29 H 0.08 2.26 7.89 -2.39 -0.02 2.24 16 30 H 0.27 15.53 8.29 -92.70 -0.77 14.76 16 Total: -1.00 -77.02 257.83 4.93 -72.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.11 Total: 16.10 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.05 Total: -3.17 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.19 Total: -84.70 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.06 Total: -43.95 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.02 4.93 -72.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.685 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds