Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 115.55573 * 2 1 4 4 C 1.52999 * 117.50095 * 214.31759 * 2 1 3 5 5 C 1.52991 * 117.50046 * 145.69289 * 2 1 3 6 6 H 1.09000 * 117.51861 * 0.02562 * 5 2 1 7 7 C 1.53000 * 117.50041 * 214.98262 * 5 2 1 8 8 N 1.46499 * 109.47189 * 174.98450 * 7 5 2 9 9 C 1.46494 * 120.00239 * 269.99435 * 8 7 5 10 10 C 1.34782 * 119.99932 * 89.99880 * 8 7 5 11 11 O 1.21692 * 119.99744 * 0.02562 * 10 8 7 12 12 C 1.46368 * 119.99807 * 179.97438 * 10 8 7 13 13 H 1.07999 * 120.00395 * 5.82300 * 12 10 8 14 14 C 1.40054 * 120.00000 * 185.81338 * 12 10 8 15 15 N 1.30670 * 119.99900 * 6.91410 * 14 12 10 16 16 Si 1.86801 * 120.00039 * 186.91248 * 14 12 10 17 17 H 1.48504 * 109.46807 * 265.01305 * 16 14 12 18 18 H 1.48503 * 109.46778 * 145.01755 * 16 14 12 19 19 H 1.48499 * 109.47255 * 25.01482 * 16 14 12 20 20 H 1.09000 * 109.47115 * 274.30752 * 1 2 3 21 21 H 1.09005 * 109.47025 * 34.31172 * 1 2 3 22 22 H 1.09000 * 109.46732 * 154.30533 * 1 2 3 23 23 H 1.08993 * 117.50171 * 145.01943 * 4 2 1 24 24 H 1.09001 * 117.51411 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.47505 * 54.98360 * 7 5 2 26 26 H 1.09006 * 109.46882 * 294.98410 * 7 5 2 27 27 H 1.09002 * 109.47402 * 270.00376 * 9 8 7 28 28 H 1.09009 * 109.46677 * 30.00288 * 9 8 7 29 29 H 1.08993 * 109.47339 * 150.00013 * 9 8 7 30 30 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8589 1.2679 7 6 3.5490 -0.7759 1.4714 8 7 4.0083 -1.9345 2.2414 9 6 3.5872 -2.1019 3.6345 10 6 4.8185 -2.8464 1.6681 11 8 5.1688 -2.7071 0.5110 12 6 5.2779 -4.0037 2.4376 13 1 4.8943 -4.1777 3.4321 14 6 6.2147 -4.8855 1.8842 15 7 6.7796 -4.6048 0.7399 16 14 6.6566 -6.4629 2.7820 17 1 7.8758 -6.2417 3.6004 18 1 6.9132 -7.5402 1.7926 19 1 5.5321 -6.8607 3.6665 20 1 -0.3633 0.0772 1.0248 21 1 -0.3633 0.8489 -0.5793 22 1 -0.3633 -0.9261 -0.4456 23 1 3.1716 -0.8750 -1.2683 24 1 1.6116 -1.8587 -1.2682 25 1 3.3891 0.0669 2.1438 26 1 4.3023 -0.5110 0.7294 27 1 4.3039 -1.6102 4.2923 28 1 2.6021 -1.6559 3.7723 29 1 3.5421 -3.1639 3.8753 30 1 7.4287 -5.2153 0.3567 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082650189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = -19.130421 kcal Electronic energy + Delta-G solvation = -12564.835048 eV Core-core repulsion = 10360.823001 eV Total energy + Delta-G solvation = -2204.012048 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.21020 -36.68047 -33.61193 -32.40097 -29.13527 -27.04179 -25.80343 -24.31033 -20.86488 -19.97554 -18.98900 -16.42513 -15.59131 -14.90098 -14.57610 -14.10932 -13.57815 -13.28668 -12.87408 -12.43376 -11.96881 -11.60581 -11.44755 -11.35889 -11.13284 -11.01800 -10.97401 -10.72705 -10.25168 -10.11401 -9.55175 -9.24200 -8.80749 -7.52363 -7.15206 -6.18581 -4.59854 3.14689 3.22214 3.26074 4.08712 4.19358 4.59349 4.68870 5.13906 5.29677 5.40691 5.55062 5.78494 5.93827 5.98978 6.05880 6.07203 6.15532 6.21449 6.29581 6.41751 6.57977 6.59693 6.65084 6.87287 7.47978 7.68922 8.19256 8.40943 9.05763 9.48696 10.61896 10.80870 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057332 B = 0.008811 C = 0.008268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.264752 B = 3177.217081 C = 3385.776382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.168 4.168 3 H 0.098 0.902 4 C -0.162 4.162 5 C -0.150 4.150 6 H 0.097 0.903 7 C 0.156 3.844 8 N -0.648 5.648 9 C 0.103 3.897 10 C 0.559 3.441 11 O -0.576 6.576 12 C -0.546 4.546 13 H 0.072 0.928 14 C 0.089 3.911 15 N -0.770 5.770 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 5.189 2.638 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.187 4.187 3 H 0.116 0.884 4 C -0.199 4.199 5 C -0.170 4.170 6 H 0.115 0.885 7 C 0.032 3.968 8 N -0.385 5.385 9 C -0.042 4.042 10 C 0.364 3.636 11 O -0.458 6.458 12 C -0.583 4.583 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.729 3.271 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.188 1.188 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.853 5.206 1.859 9.604 hybrid contribution 0.163 -0.825 0.534 0.996 sum -7.690 4.380 2.394 9.168 Atomic orbital electron populations 1.21314 0.93522 1.01365 1.01245 1.22381 0.94597 0.94700 1.06988 0.88360 1.23048 1.01966 0.99962 0.94961 1.22963 0.99409 1.00147 0.94443 0.88509 1.20576 0.92803 0.88581 0.94883 1.47975 1.53439 1.25513 1.11608 1.21376 0.96947 1.01913 0.83930 1.18226 0.76852 0.81836 0.86657 1.90578 1.59745 1.77269 1.18245 1.21015 1.26043 1.08616 1.02632 0.91002 1.25718 0.94548 0.98473 0.94334 1.69996 1.20016 1.34297 1.15528 0.86406 0.79261 0.81639 0.79745 1.19861 1.20407 1.18843 0.92655 0.92725 0.92866 0.88693 0.89692 0.92723 0.90885 0.95100 0.94152 0.91159 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.19 37.16 0.38 -1.05 16 2 C -0.17 -2.48 6.13 -90.62 -0.56 -3.04 16 3 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.16 -2.88 9.82 -26.73 -0.26 -3.14 16 5 C -0.15 -2.74 5.73 -90.63 -0.52 -3.26 16 6 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 7 C 0.16 3.17 5.69 -4.04 -0.02 3.14 16 8 N -0.65 -15.20 2.87 -183.25 -0.53 -15.72 16 9 C 0.10 1.96 10.19 59.84 0.61 2.57 16 10 C 0.56 16.21 7.59 -12.99 -0.10 16.12 16 11 O -0.58 -18.78 14.68 5.20 0.08 -18.70 16 12 C -0.55 -15.60 8.76 -35.63 -0.31 -15.91 16 13 H 0.07 1.88 5.95 -52.49 -0.31 1.56 16 14 C 0.09 2.51 5.49 -17.37 -0.10 2.41 16 15 N -0.77 -23.31 11.90 55.55 0.66 -22.65 16 16 Si 0.90 20.30 29.56 -169.99 -5.03 15.28 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 23 H 0.09 1.81 8.03 -51.93 -0.42 1.39 16 24 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 25 H 0.05 0.94 8.07 -51.93 -0.42 0.53 16 26 H 0.07 1.65 7.15 -51.93 -0.37 1.28 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.64 8.07 -51.92 -0.42 0.22 16 29 H 0.07 1.38 6.03 -51.93 -0.31 1.06 16 30 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 258.17 15.07 3.89 3.89 Total: -1.00 -33.43 258.17 -6.13 -39.56 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.33 Total: 0.51 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.88 Total: -2.16 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.13 Total: -38.37 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.70 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.43 -6.13 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.433 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds