Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 115.55573 * 2 1 4 4 C 1.52999 * 117.50095 * 214.31759 * 2 1 3 5 5 C 1.52991 * 117.50046 * 145.69289 * 2 1 3 6 6 H 1.09000 * 117.51861 * 0.02562 * 5 2 1 7 7 C 1.53000 * 117.50041 * 214.98262 * 5 2 1 8 8 N 1.46499 * 109.47189 * 174.98450 * 7 5 2 9 9 C 1.46494 * 120.00239 * 269.99435 * 8 7 5 10 10 C 1.34782 * 119.99932 * 89.99880 * 8 7 5 11 11 O 1.21692 * 119.99744 * 0.02562 * 10 8 7 12 12 C 1.46368 * 119.99807 * 179.97438 * 10 8 7 13 13 H 1.07999 * 120.00395 * 5.82300 * 12 10 8 14 14 C 1.40054 * 120.00000 * 185.81338 * 12 10 8 15 15 N 1.30670 * 119.99900 * 6.91410 * 14 12 10 16 16 Si 1.86801 * 120.00039 * 186.91248 * 14 12 10 17 17 H 1.48504 * 109.46807 * 265.01305 * 16 14 12 18 18 H 1.48503 * 109.46778 * 145.01755 * 16 14 12 19 19 H 1.48499 * 109.47255 * 25.01482 * 16 14 12 20 20 H 1.09000 * 109.47115 * 274.30752 * 1 2 3 21 21 H 1.09005 * 109.47025 * 34.31172 * 1 2 3 22 22 H 1.09000 * 109.46732 * 154.30533 * 1 2 3 23 23 H 1.08993 * 117.50171 * 145.01943 * 4 2 1 24 24 H 1.09001 * 117.51411 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.47505 * 54.98360 * 7 5 2 26 26 H 1.09006 * 109.46882 * 294.98410 * 7 5 2 27 27 H 1.09002 * 109.47402 * 270.00376 * 9 8 7 28 28 H 1.09009 * 109.46677 * 30.00288 * 9 8 7 29 29 H 1.08993 * 109.47339 * 150.00013 * 9 8 7 30 30 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8589 1.2679 7 6 3.5490 -0.7759 1.4714 8 7 4.0083 -1.9345 2.2414 9 6 3.5872 -2.1019 3.6345 10 6 4.8185 -2.8464 1.6681 11 8 5.1688 -2.7071 0.5110 12 6 5.2779 -4.0037 2.4376 13 1 4.8943 -4.1777 3.4321 14 6 6.2147 -4.8855 1.8842 15 7 6.7796 -4.6048 0.7399 16 14 6.6566 -6.4629 2.7820 17 1 7.8758 -6.2417 3.6004 18 1 6.9132 -7.5402 1.7926 19 1 5.5321 -6.8607 3.6665 20 1 -0.3633 0.0772 1.0248 21 1 -0.3633 0.8489 -0.5793 22 1 -0.3633 -0.9261 -0.4456 23 1 3.1716 -0.8750 -1.2683 24 1 1.6116 -1.8587 -1.2682 25 1 3.3891 0.0669 2.1438 26 1 4.3023 -0.5110 0.7294 27 1 4.3039 -1.6102 4.2923 28 1 2.6021 -1.6559 3.7723 29 1 3.5421 -3.1639 3.8753 30 1 7.4287 -5.2153 0.3567 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082650189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = -41.181579 kcal Electronic energy + Delta-G solvation = -12565.791258 eV Core-core repulsion = 10360.823001 eV Total energy + Delta-G solvation = -2204.968257 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95845 -38.37399 -35.54656 -34.58109 -30.52354 -28.69239 -27.59368 -26.10830 -22.44505 -21.30554 -20.84245 -18.42672 -17.66360 -16.54705 -16.20237 -15.91781 -15.15416 -14.79879 -14.36463 -13.87823 -13.42001 -13.26805 -13.07840 -13.06622 -12.98610 -12.74925 -12.42145 -12.19462 -12.12279 -12.02027 -10.93383 -10.87165 -10.63138 -9.74355 -9.05222 -8.30120 -6.81802 1.39033 1.40966 1.56629 2.24298 2.47489 2.73775 3.04550 3.60247 3.86212 3.93531 4.10191 4.42639 4.50752 4.59145 4.65735 4.71678 4.92163 4.93835 4.98352 5.03390 5.06353 5.18766 5.29835 5.38696 5.47799 5.78828 6.16751 6.45373 6.89083 7.45103 8.50134 8.69062 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057332 B = 0.008811 C = 0.008268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.264752 B = 3177.217081 C = 3385.776382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.125 4.125 3 H 0.113 0.887 4 C -0.187 4.187 5 C -0.167 4.167 6 H 0.093 0.907 7 C 0.155 3.845 8 N -0.652 5.652 9 C 0.100 3.900 10 C 0.540 3.460 11 O -0.629 6.629 12 C -0.573 4.573 13 H 0.093 0.907 14 C 0.029 3.971 15 N -0.825 5.825 16 Si 0.995 3.005 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.248 1.248 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 5.263 4.533 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.143 4.143 3 H 0.131 0.869 4 C -0.225 4.225 5 C -0.187 4.187 6 H 0.111 0.889 7 C 0.032 3.968 8 N -0.388 5.388 9 C -0.043 4.043 10 C 0.345 3.655 11 O -0.516 6.516 12 C -0.610 4.610 13 H 0.111 0.889 14 C -0.186 4.186 15 N -0.455 5.455 16 Si 0.814 3.186 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.171 1.171 20 H 0.088 0.912 21 H 0.096 0.904 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.397 5.321 3.800 11.448 hybrid contribution 0.594 -0.754 -0.056 0.962 sum -8.803 4.567 3.744 10.601 Atomic orbital electron populations 1.21370 0.90911 1.02360 1.02673 1.22506 0.96308 0.93738 1.01770 0.86897 1.23045 1.01927 1.02647 0.94834 1.22828 0.99049 1.02647 0.94179 0.88882 1.20702 0.92763 0.88582 0.94775 1.47878 1.52336 1.25120 1.13421 1.21564 0.99260 1.02075 0.81405 1.18642 0.77471 0.83063 0.86300 1.90529 1.61928 1.78726 1.20389 1.21553 1.26575 1.09174 1.03664 0.88944 1.26995 0.93844 1.02702 0.95043 1.70170 1.21066 1.36299 1.17939 0.85053 0.79618 0.75611 0.78304 1.18464 1.19973 1.17110 0.91156 0.90382 0.93094 0.91184 0.89435 0.89090 0.94351 0.93789 0.90335 0.91919 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 10.19 71.98 0.73 -1.70 16 2 C -0.12 -3.43 6.13 -10.80 -0.07 -3.50 16 3 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 4 C -0.19 -6.78 9.82 30.59 0.30 -6.48 16 5 C -0.17 -6.02 5.73 -10.80 -0.06 -6.08 16 6 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 7 C 0.16 6.29 5.69 86.38 0.49 6.78 16 8 N -0.65 -30.59 2.87 -851.89 -2.45 -33.04 16 9 C 0.10 3.61 10.19 127.77 1.30 4.91 16 10 C 0.54 32.23 7.59 86.36 0.66 32.88 16 11 O -0.63 -43.12 14.68 -4.32 -0.06 -43.18 16 12 C -0.57 -33.07 8.76 24.83 0.22 -32.85 16 13 H 0.09 4.76 5.95 -2.91 -0.02 4.74 16 14 C 0.03 1.64 5.49 85.31 0.47 2.11 16 15 N -0.83 -51.58 11.90 21.84 0.26 -51.32 16 16 Si 0.99 41.55 29.56 68.60 2.03 43.58 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 20 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 23 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 24 H 0.09 3.04 8.05 -2.39 -0.02 3.02 16 25 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 26 H 0.04 1.80 7.15 -2.38 -0.02 1.78 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.08 2.23 8.07 -2.38 -0.02 2.21 16 29 H 0.06 2.35 6.03 -2.39 -0.01 2.34 16 30 H 0.27 15.48 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -75.80 258.17 4.93 -70.88 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.11 Total: 17.01 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.04 Total: -3.92 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.19 Total: -84.36 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.06 Total: -43.18 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -75.80 4.93 -70.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.697 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds