Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 115.54430 * 2 1 4 4 C 1.53070 * 117.53134 * 145.71256 * 2 1 3 5 5 C 1.52997 * 117.49899 * 214.33036 * 2 1 3 6 6 H 1.09001 * 117.49837 * 144.97121 * 5 2 1 7 7 C 1.52997 * 117.50235 * 359.97438 * 5 2 1 8 8 N 1.46493 * 109.47650 * 175.08677 * 7 5 2 9 9 C 1.46494 * 120.00195 * 270.00480 * 8 7 5 10 10 C 1.34778 * 119.99916 * 89.99608 * 8 7 5 11 11 O 1.21686 * 120.00075 * 0.02562 * 10 8 7 12 12 C 1.46372 * 120.00190 * 180.02562 * 10 8 7 13 13 H 1.08004 * 120.00206 * 8.38140 * 12 10 8 14 14 C 1.40050 * 120.00263 * 188.38627 * 12 10 8 15 15 N 1.30673 * 120.00389 * 192.62613 * 14 12 10 16 16 Si 1.86801 * 119.99687 * 12.62904 * 14 12 10 17 17 H 1.48508 * 109.47020 * 269.99819 * 16 14 12 18 18 H 1.48493 * 109.47448 * 29.99730 * 16 14 12 19 19 H 1.48502 * 109.46930 * 150.00206 * 16 14 12 20 20 H 1.09000 * 109.47051 * 205.66551 * 1 2 3 21 21 H 1.09000 * 109.47446 * 325.67537 * 1 2 3 22 22 H 1.09000 * 109.46976 * 85.67114 * 1 2 3 23 23 H 1.08997 * 117.51390 * 359.97438 * 4 2 1 24 24 H 1.08997 * 117.49235 * 214.95675 * 4 2 1 25 25 H 1.09003 * 109.47018 * 55.08351 * 7 5 2 26 26 H 1.09003 * 109.47355 * 295.09235 * 7 5 2 27 27 H 1.08998 * 109.47365 * 269.99713 * 9 8 7 28 28 H 1.08998 * 109.47446 * 29.99688 * 9 8 7 29 29 H 1.09001 * 109.47522 * 149.99411 * 9 8 7 30 30 H 0.97000 * 119.99673 * 354.69069 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1215 0.7647 5 6 2.2365 -1.1207 -0.7654 6 1 3.1712 -0.8745 -1.2693 7 6 1.3590 -2.1560 -1.4717 8 7 2.2060 -3.0714 -2.2402 9 6 2.5401 -2.7650 -3.6332 10 6 2.6780 -4.1955 -1.6656 11 8 2.4003 -4.4502 -0.5085 12 6 3.5248 -5.1099 -2.4332 13 1 3.8829 -4.8222 -3.4107 14 6 3.8706 -6.3580 -1.9003 15 7 4.8136 -7.0688 -2.4598 16 14 2.9838 -7.0066 -0.3896 17 1 3.7004 -6.5636 0.8334 18 1 1.5951 -6.4813 -0.3671 19 1 2.9511 -8.4906 -0.4339 20 1 -0.3633 -0.9263 0.4451 21 1 -0.3634 0.8487 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 1.6131 -1.8593 1.2683 24 1 3.1729 -0.8754 1.2674 25 1 0.6684 -1.6482 -2.1450 26 1 0.7939 -2.7203 -0.7297 27 1 1.7877 -3.1995 -4.2914 28 1 2.5636 -1.6842 -3.7720 29 1 3.5177 -3.1834 -3.8729 30 1 5.2208 -6.7687 -3.2875 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082650190.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -31.678301 kcal Electronic energy + Delta-G solvation = -12731.319826 eV Core-core repulsion = 10526.763661 eV Total energy + Delta-G solvation = -2204.556164 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60780 -37.06605 -33.96214 -32.85699 -28.73441 -27.61864 -25.96401 -24.48049 -21.18936 -19.84481 -18.75300 -17.31644 -15.87429 -15.31025 -14.58313 -14.38652 -13.67877 -13.08314 -12.99205 -12.47682 -12.32433 -11.99077 -11.92045 -11.64548 -11.36027 -11.14785 -11.00802 -10.54771 -9.97206 -9.64780 -9.41290 -9.14974 -8.85719 -7.90239 -7.46442 -6.95666 -4.86106 3.60108 3.66692 3.98715 4.08928 4.34044 4.39596 4.61894 4.97584 5.19859 5.22751 5.45116 5.52043 5.85742 5.85942 5.92601 5.94714 6.01474 6.10573 6.15390 6.23653 6.41533 6.42697 6.52188 6.68054 7.31779 7.79604 7.86544 8.18028 8.88842 9.04200 10.12997 10.36444 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047552 B = 0.010839 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.693115 B = 2582.582003 C = 2923.743871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.164 4.164 3 H 0.096 0.904 4 C -0.164 4.164 5 C -0.155 4.155 6 H 0.097 0.903 7 C 0.156 3.844 8 N -0.639 5.639 9 C 0.102 3.898 10 C 0.553 3.447 11 O -0.613 6.613 12 C -0.601 4.601 13 H 0.075 0.925 14 C 0.063 3.937 15 N -0.835 5.835 16 Si 1.121 2.879 17 H -0.288 1.288 18 H -0.276 1.276 19 H -0.321 1.321 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 11.155 0.628 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 H 0.114 0.886 4 C -0.201 4.201 5 C -0.175 4.175 6 H 0.115 0.885 7 C 0.032 3.968 8 N -0.373 5.373 9 C -0.042 4.042 10 C 0.363 3.637 11 O -0.505 6.505 12 C -0.637 4.637 13 H 0.093 0.907 14 C -0.155 4.155 15 N -0.462 5.462 16 Si 0.953 3.047 17 H -0.215 1.215 18 H -0.202 1.202 19 H -0.253 1.253 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.142 9.822 2.182 11.788 hybrid contribution 0.376 1.540 -1.455 2.152 sum -5.766 11.363 0.727 12.763 Atomic orbital electron populations 1.21312 0.93219 1.01727 1.01464 1.22371 0.95167 0.94139 1.06566 0.88571 1.23056 1.01911 1.00413 0.94716 1.22913 1.01143 0.98844 0.94574 0.88456 1.20637 0.91605 0.89630 0.94924 1.47569 1.54054 1.23805 1.11890 1.21416 1.01064 0.98493 0.83246 1.18392 0.79191 0.79880 0.86254 1.90202 1.66160 1.74661 1.19486 1.22135 1.32867 1.02654 1.06042 0.90739 1.27092 0.92394 0.92807 1.03203 1.70634 1.17348 1.41080 1.17182 0.82606 0.77657 0.71079 0.73368 1.21511 1.20235 1.25264 0.92342 0.92695 0.92449 0.88518 0.89598 0.92240 0.90577 0.94618 0.93658 0.91055 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.20 37.16 0.34 -1.10 16 2 C -0.16 -2.26 6.41 -90.58 -0.58 -2.84 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.16 -2.70 9.83 -26.69 -0.26 -2.96 16 5 C -0.16 -2.66 6.01 -90.62 -0.54 -3.21 16 6 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 7 C 0.16 2.95 4.77 -4.05 -0.02 2.93 16 8 N -0.64 -14.29 2.87 -183.26 -0.53 -14.81 16 9 C 0.10 1.89 10.20 59.84 0.61 2.50 16 10 C 0.55 15.11 7.36 -12.99 -0.10 15.02 16 11 O -0.61 -17.92 11.77 5.20 0.06 -17.85 16 12 C -0.60 -17.20 9.16 -35.63 -0.33 -17.53 16 13 H 0.07 2.08 6.14 -52.48 -0.32 1.76 16 14 C 0.06 1.83 5.52 -17.37 -0.10 1.73 16 15 N -0.83 -24.40 13.64 55.55 0.76 -23.64 16 16 Si 1.12 29.95 26.40 -169.99 -4.49 25.47 16 17 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 18 H -0.28 -7.55 6.43 56.52 0.36 -7.18 16 19 H -0.32 -8.20 7.11 56.52 0.40 -7.80 16 20 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 23 H 0.10 1.69 7.94 -51.93 -0.41 1.28 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 26 H 0.08 1.57 7.15 -51.93 -0.37 1.20 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.07 1.41 6.00 -51.93 -0.31 1.10 16 30 H 0.28 7.77 8.73 -40.82 -0.36 7.41 16 LS Contribution 251.96 15.07 3.80 3.80 Total: -1.00 -31.61 251.96 -5.73 -37.34 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -4.36 Total: -4.84 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.97 Total: -5.45 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.23 Total: -38.46 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.06 Total: -17.85 kcal Atomic # 14 Polarization: 29.95 SS G_CDS: -4.49 Total: 25.47 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.61 -5.73 -37.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650190.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.663 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds