Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 115.54430 * 2 1 4 4 C 1.53070 * 117.53134 * 145.71256 * 2 1 3 5 5 C 1.52997 * 117.49899 * 214.33036 * 2 1 3 6 6 H 1.09001 * 117.49837 * 144.97121 * 5 2 1 7 7 C 1.52997 * 117.50235 * 359.97438 * 5 2 1 8 8 N 1.46493 * 109.47650 * 175.08677 * 7 5 2 9 9 C 1.46494 * 120.00195 * 270.00480 * 8 7 5 10 10 C 1.34778 * 119.99916 * 89.99608 * 8 7 5 11 11 O 1.21686 * 120.00075 * 0.02562 * 10 8 7 12 12 C 1.46372 * 120.00190 * 180.02562 * 10 8 7 13 13 H 1.08004 * 120.00206 * 8.38140 * 12 10 8 14 14 C 1.40050 * 120.00263 * 188.38627 * 12 10 8 15 15 N 1.30673 * 120.00389 * 192.62613 * 14 12 10 16 16 Si 1.86801 * 119.99687 * 12.62904 * 14 12 10 17 17 H 1.48508 * 109.47020 * 269.99819 * 16 14 12 18 18 H 1.48493 * 109.47448 * 29.99730 * 16 14 12 19 19 H 1.48502 * 109.46930 * 150.00206 * 16 14 12 20 20 H 1.09000 * 109.47051 * 205.66551 * 1 2 3 21 21 H 1.09000 * 109.47446 * 325.67537 * 1 2 3 22 22 H 1.09000 * 109.46976 * 85.67114 * 1 2 3 23 23 H 1.08997 * 117.51390 * 359.97438 * 4 2 1 24 24 H 1.08997 * 117.49235 * 214.95675 * 4 2 1 25 25 H 1.09003 * 109.47018 * 55.08351 * 7 5 2 26 26 H 1.09003 * 109.47355 * 295.09235 * 7 5 2 27 27 H 1.08998 * 109.47365 * 269.99713 * 9 8 7 28 28 H 1.08998 * 109.47446 * 29.99688 * 9 8 7 29 29 H 1.09001 * 109.47522 * 149.99411 * 9 8 7 30 30 H 0.97000 * 119.99673 * 354.69069 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1215 0.7647 5 6 2.2365 -1.1207 -0.7654 6 1 3.1712 -0.8745 -1.2693 7 6 1.3590 -2.1560 -1.4717 8 7 2.2060 -3.0714 -2.2402 9 6 2.5401 -2.7650 -3.6332 10 6 2.6780 -4.1955 -1.6656 11 8 2.4003 -4.4502 -0.5085 12 6 3.5248 -5.1099 -2.4332 13 1 3.8829 -4.8222 -3.4107 14 6 3.8706 -6.3580 -1.9003 15 7 4.8136 -7.0688 -2.4598 16 14 2.9838 -7.0066 -0.3896 17 1 3.7004 -6.5636 0.8334 18 1 1.5951 -6.4813 -0.3671 19 1 2.9511 -8.4906 -0.4339 20 1 -0.3633 -0.9263 0.4451 21 1 -0.3634 0.8487 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 1.6131 -1.8593 1.2683 24 1 3.1729 -0.8754 1.2674 25 1 0.6684 -1.6482 -2.1450 26 1 0.7939 -2.7203 -0.7297 27 1 1.7877 -3.1995 -4.2914 28 1 2.5636 -1.6842 -3.7720 29 1 3.5177 -3.1834 -3.8729 30 1 5.2208 -6.7687 -3.2875 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082650190.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -51.929535 kcal Electronic energy + Delta-G solvation = -12732.197985 eV Core-core repulsion = 10526.763661 eV Total energy + Delta-G solvation = -2205.434324 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.33876 -38.62915 -35.79233 -35.08082 -30.09247 -29.01624 -27.82373 -26.26134 -22.54664 -21.55838 -20.29192 -19.32932 -17.62095 -17.12258 -16.14358 -16.06987 -15.65340 -14.64350 -14.45816 -14.23109 -13.77874 -13.72744 -13.54751 -13.05664 -12.79865 -12.72804 -12.50729 -12.26122 -12.08043 -11.28868 -11.08489 -10.85917 -10.68307 -10.02258 -9.29306 -9.18108 -7.08996 1.43394 1.51784 1.94627 2.18330 2.37052 2.62459 2.95596 3.31270 3.77375 3.94444 4.02220 4.42153 4.42701 4.47811 4.57404 4.65168 4.86285 4.92578 4.94461 4.96806 5.00211 5.18103 5.25410 5.40630 5.47747 5.57626 5.88511 6.19054 6.67139 7.05089 8.02949 8.12347 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047552 B = 0.010839 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.693115 B = 2582.582003 C = 2923.743871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.121 0.879 4 C -0.186 4.186 5 C -0.176 4.176 6 H 0.091 0.909 7 C 0.157 3.843 8 N -0.641 5.641 9 C 0.099 3.901 10 C 0.547 3.453 11 O -0.639 6.639 12 C -0.618 4.618 13 H 0.074 0.926 14 C 0.030 3.970 15 N -0.850 5.850 16 Si 1.153 2.847 17 H -0.295 1.295 18 H -0.289 1.289 19 H -0.303 1.303 20 H 0.045 0.955 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 13.070 0.337 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.139 0.861 4 C -0.223 4.223 5 C -0.195 4.195 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.373 5.373 9 C -0.044 4.044 10 C 0.355 3.645 11 O -0.533 6.533 12 C -0.655 4.655 13 H 0.092 0.908 14 C -0.184 4.184 15 N -0.478 5.478 16 Si 0.983 3.017 17 H -0.222 1.222 18 H -0.217 1.217 19 H -0.233 1.233 20 H 0.064 0.936 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.146 11.760 1.857 13.886 hybrid contribution 0.657 1.045 -1.399 1.866 sum -6.489 12.805 0.458 14.363 Atomic orbital electron populations 1.21391 0.91663 1.02224 1.02702 1.22504 0.96212 0.93717 1.01736 0.86142 1.23084 1.02640 1.02212 0.94389 1.22803 1.01504 1.00684 0.94536 0.89061 1.20797 0.91698 0.89210 0.94933 1.47553 1.53358 1.22914 1.13457 1.21584 1.00462 1.01091 0.81228 1.18344 0.79145 0.81226 0.85834 1.90178 1.66842 1.75768 1.20473 1.22333 1.33663 1.03154 1.06335 0.90807 1.27755 0.92697 0.93460 1.04500 1.70644 1.18025 1.41521 1.17646 0.82177 0.76155 0.71720 0.71680 1.22194 1.21683 1.23278 0.93578 0.90269 0.91098 0.90333 0.89339 0.88746 0.92948 0.93265 0.89691 0.92794 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.20 71.98 0.66 -1.85 16 2 C -0.12 -3.01 6.41 -10.77 -0.07 -3.07 16 3 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.19 -5.96 9.83 30.62 0.30 -5.66 16 5 C -0.18 -5.70 6.01 -10.79 -0.06 -5.76 16 6 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 7 C 0.16 5.63 4.77 86.38 0.41 6.04 16 8 N -0.64 -27.83 2.87 -851.93 -2.45 -30.27 16 9 C 0.10 3.47 10.20 127.77 1.30 4.77 16 10 C 0.55 29.89 7.36 86.36 0.64 30.52 16 11 O -0.64 -37.64 11.77 -4.30 -0.05 -37.69 16 12 C -0.62 -35.60 9.16 24.83 0.23 -35.37 16 13 H 0.07 4.16 6.14 -2.91 -0.02 4.14 16 14 C 0.03 1.78 5.52 85.30 0.47 2.25 16 15 N -0.85 -49.80 13.64 21.84 0.30 -49.51 16 16 Si 1.15 61.19 26.40 68.60 1.81 63.01 16 17 H -0.29 -15.80 7.11 99.48 0.71 -15.09 16 18 H -0.29 -15.88 6.43 99.48 0.64 -15.24 16 19 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 20 H 0.05 1.07 7.90 -2.39 -0.02 1.05 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.07 1.29 7.84 -2.39 -0.02 1.27 16 23 H 0.08 2.78 7.94 -2.39 -0.02 2.76 16 24 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.09 2.70 7.70 -2.39 -0.02 2.68 16 26 H 0.05 2.14 7.15 -2.39 -0.02 2.12 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 29 H 0.05 2.08 6.00 -2.39 -0.01 2.06 16 30 H 0.28 15.67 8.73 -92.71 -0.81 14.86 16 Total: -1.00 -67.43 251.96 4.49 -62.94 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.00 Total: -0.34 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 3.88 Total: -8.13 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -2.15 Total: -79.78 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.05 Total: -37.69 kcal Atomic # 14 Polarization: 61.19 SS G_CDS: 1.81 Total: 63.01 kcal Total: -67.43 4.49 -62.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082650190.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.010 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds