Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 120.00425 * 2 1 4 4 N 1.34775 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.47432 * 125.64345 * 355.14635 * 4 2 1 6 6 C 1.54912 * 104.83089 * 155.83734 * 5 4 2 7 7 C 1.55162 * 101.58294 * 37.00832 * 6 5 4 8 8 C 1.47018 * 125.65440 * 175.10508 * 4 2 1 9 9 H 1.09004 * 109.88034 * 300.51601 * 8 4 2 10 10 C 1.53006 * 109.88162 * 61.52077 * 8 4 2 11 11 C 1.50701 * 109.46926 * 185.37556 * 10 8 4 12 12 H 1.07996 * 120.00128 * 5.02953 * 11 10 8 13 13 C 1.37876 * 119.99371 * 185.02773 * 11 10 8 14 14 N 1.31525 * 119.99645 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00474 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47179 * 90.00239 * 15 13 11 17 17 H 1.48506 * 109.47513 * 210.00094 * 15 13 11 18 18 H 1.48505 * 109.47363 * 330.00014 * 15 13 11 19 19 H 1.08994 * 109.47328 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46991 * 300.00087 * 1 2 3 21 21 H 1.09006 * 109.47506 * 59.99480 * 1 2 3 22 22 H 1.08999 * 110.36827 * 37.00015 * 5 4 2 23 23 H 1.08997 * 110.36526 * 274.67348 * 5 4 2 24 24 H 1.08991 * 111.00626 * 155.08124 * 6 5 4 25 25 H 1.09003 * 111.00526 * 278.93543 * 6 5 4 26 26 H 1.08993 * 110.72176 * 82.86101 * 7 6 5 27 27 H 1.09000 * 110.71786 * 206.13855 * 7 6 5 28 28 H 1.08999 * 109.47074 * 305.37580 * 10 8 4 29 29 H 1.09000 * 109.46761 * 65.37718 * 10 8 4 30 30 H 0.96993 * 119.99943 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5766 -2.5082 0.1003 6 6 2.6114 -3.4593 -0.5510 7 6 3.9506 -2.8257 -0.0897 8 6 3.6401 -1.3141 -0.1025 9 1 3.9931 -0.8710 -1.0338 10 6 4.3164 -0.6306 1.0877 11 6 5.8120 -0.6715 0.9071 12 1 6.2352 -1.0647 -0.0053 13 6 6.6399 -0.2067 1.9069 14 7 7.9452 -0.2419 1.7492 15 14 5.9079 0.4741 3.4848 16 1 5.7470 -0.6250 4.4704 17 1 6.8125 1.5110 4.0432 18 1 4.5822 1.0776 3.1955 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.6341 -2.5416 -0.4462 23 1 1.4201 -2.7761 1.1451 24 1 2.5062 -4.4736 -0.1663 25 1 2.5261 -3.4445 -1.6376 26 1 4.2082 -3.1580 0.9159 27 1 4.7505 -3.0611 -0.7917 28 1 3.9857 0.4063 1.1472 29 1 4.0470 -1.1512 2.0067 30 1 8.5276 0.0854 2.4523 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084428419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -43.214751 kcal Electronic energy + Delta-G solvation = -12861.235523 eV Core-core repulsion = 10656.179100 eV Total energy + Delta-G solvation = -2205.056422 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63293 -36.96419 -33.14353 -31.63404 -30.64701 -28.91036 -26.47298 -23.28249 -21.61590 -20.37466 -18.35677 -16.97675 -16.37409 -15.76315 -14.75607 -14.21905 -13.99340 -13.24124 -12.96986 -12.63861 -12.47819 -12.39232 -12.09497 -11.86105 -11.31476 -10.94360 -10.80659 -10.57787 -10.13120 -9.84032 -9.72228 -9.41128 -8.98904 -8.45579 -8.06147 -5.98793 -3.95495 3.06949 3.35578 3.43869 3.48635 3.54238 4.53008 4.82016 4.87200 5.11338 5.24945 5.36746 5.43819 5.53382 5.58579 5.75305 5.89055 5.92474 6.09187 6.21495 6.47848 6.66720 6.72159 6.88725 7.33179 7.60238 7.81405 8.06803 8.56698 8.65963 9.05076 9.64665 11.14457 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.012268 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.458979 B = 2281.765102 C = 2729.441829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.517 3.483 3 O -0.539 6.539 4 N -0.618 5.618 5 C 0.099 3.901 6 C -0.138 4.138 7 C -0.112 4.112 8 C 0.146 3.854 9 H 0.068 0.932 10 C -0.020 4.020 11 C -0.512 4.512 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.265 1.265 19 H 0.073 0.927 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.010 0.990 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 -6.471 -2.898 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.353 5.353 5 C -0.024 4.024 6 C -0.176 4.176 7 C -0.151 4.151 8 C 0.045 3.955 9 H 0.086 0.914 10 C -0.059 4.059 11 C -0.550 4.550 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.544 5.544 15 Si 0.704 3.296 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.189 1.189 19 H 0.092 0.908 20 H 0.108 0.892 21 H 0.107 0.893 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.424 -5.775 -2.815 15.791 hybrid contribution -0.257 0.294 0.928 1.007 sum -14.681 -5.482 -1.887 15.785 Atomic orbital electron populations 1.21888 0.92604 1.03754 1.04678 1.20343 0.89852 0.82633 0.76673 1.90748 1.70431 1.30670 1.49720 1.48867 1.08859 1.05235 1.72342 1.22295 0.96671 0.83004 1.00434 1.22827 0.95960 0.98322 1.00497 1.22585 0.95875 0.93781 1.02817 1.21694 0.77294 0.95689 1.00859 0.91360 1.19929 0.96475 0.97050 0.92401 1.20985 0.88576 1.41455 1.04020 0.90931 1.24951 0.94667 0.95215 0.98421 1.69910 1.02660 1.47735 1.34071 0.86811 0.79810 0.79170 0.83805 1.20457 1.21385 1.18908 0.90830 0.89240 0.89254 0.91173 0.91677 0.90394 0.91124 0.90200 0.90330 0.94725 0.97179 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.20 36.00 0.37 -1.66 16 2 C 0.52 9.49 7.77 -10.99 -0.09 9.40 16 3 O -0.54 -12.73 15.88 5.55 0.09 -12.64 16 4 N -0.62 -10.97 3.07 -163.01 -0.50 -11.47 16 5 C 0.10 1.26 6.52 -2.52 -0.02 1.25 16 6 C -0.14 -1.71 7.09 -24.58 -0.17 -1.89 16 7 C -0.11 -1.93 6.04 -24.89 -0.15 -2.08 16 8 C 0.15 3.07 2.86 -66.95 -0.19 2.87 16 9 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 10 C -0.02 -0.53 3.52 -27.88 -0.10 -0.62 16 11 C -0.51 -14.98 9.21 -34.44 -0.32 -15.30 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -28.53 13.96 55.43 0.77 -27.76 16 15 Si 0.88 23.03 27.37 -169.99 -4.65 18.38 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.26 -7.03 6.69 56.52 0.38 -6.65 16 19 H 0.07 0.68 5.99 -51.93 -0.31 0.37 16 20 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.07 0.68 6.74 -51.93 -0.35 0.33 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.98 5.95 -51.93 -0.31 0.68 16 29 H 0.01 0.25 7.17 -51.93 -0.37 -0.12 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 246.78 15.07 3.72 3.72 Total: -1.00 -34.79 246.78 -5.62 -40.41 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.28 Total: -4.57 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.76 Total: -6.07 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.27 Total: -39.23 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.65 Total: 18.38 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.79 -5.62 -40.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.808 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds