Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99972 * 2 1 4 4 N 1.34771 * 120.00033 * 179.97438 * 2 1 3 5 5 C 1.47426 * 125.64814 * 4.96587 * 4 2 1 6 6 C 1.54909 * 104.83466 * 204.09336 * 5 4 2 7 7 C 1.55159 * 101.58037 * 322.99415 * 6 5 4 8 8 C 1.47024 * 125.65141 * 184.92753 * 4 2 1 9 9 H 1.08994 * 109.87983 * 59.40218 * 8 4 2 10 10 C 1.53004 * 109.87962 * 298.39733 * 8 4 2 11 11 C 1.50693 * 109.46914 * 174.78070 * 10 8 4 12 12 H 1.08001 * 120.00329 * 355.01549 * 11 10 8 13 13 C 1.37878 * 120.00193 * 175.02670 * 11 10 8 14 14 N 1.31519 * 119.99554 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00377 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47317 * 269.99678 * 15 13 11 17 17 H 1.48504 * 109.47108 * 29.99856 * 15 13 11 18 18 H 1.48496 * 109.47004 * 149.99733 * 15 13 11 19 19 H 1.08996 * 109.47197 * 269.99925 * 1 2 3 20 20 H 1.09000 * 109.47199 * 30.00119 * 1 2 3 21 21 H 1.08998 * 109.47174 * 150.00054 * 1 2 3 22 22 H 1.08996 * 110.37133 * 322.93580 * 5 4 2 23 23 H 1.09005 * 110.36440 * 85.14530 * 5 4 2 24 24 H 1.08995 * 111.00529 * 81.06436 * 6 5 4 25 25 H 1.08996 * 111.00474 * 204.91982 * 6 5 4 26 26 H 1.09000 * 110.71882 * 277.13587 * 7 6 5 27 27 H 1.09002 * 110.72087 * 153.86670 * 7 6 5 28 28 H 1.09000 * 109.47171 * 54.77405 * 10 8 4 29 29 H 1.09000 * 109.46495 * 294.77611 * 10 8 4 30 30 H 0.97002 * 120.00446 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5769 -2.5080 -0.1026 6 6 2.6114 -3.4601 0.5479 7 6 3.9507 -2.8256 0.0884 8 6 3.6402 -1.3141 0.1032 9 1 3.9928 -0.8700 1.0340 10 6 4.3168 -0.6320 -1.0876 11 6 5.8124 -0.6762 -0.9083 12 1 6.2356 -1.0710 0.0035 13 6 6.6406 -0.2122 -1.9083 14 7 6.1252 0.2684 -3.0187 15 14 8.4945 -0.2662 -1.6858 16 1 8.9549 0.9988 -1.0589 17 1 8.8550 -1.4116 -0.8121 18 1 9.1473 -0.4288 -3.0097 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 0.6340 -2.5425 0.4431 23 1 1.4192 -2.7737 -1.1479 24 1 2.5254 -3.4469 1.6344 25 1 2.5064 -4.4738 0.1615 26 1 4.2089 -3.1564 -0.9176 27 1 4.7503 -3.0620 0.7904 28 1 3.9883 0.4056 -1.1468 29 1 4.0455 -1.1520 -2.0063 30 1 5.1625 0.2968 -3.1341 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084428422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = -51.581445 kcal Electronic energy + Delta-G solvation = -12841.477651 eV Core-core repulsion = 10636.058421 eV Total energy + Delta-G solvation = -2205.419230 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.59110 -36.94315 -33.46096 -31.58125 -30.25420 -28.75045 -25.75004 -23.27770 -21.94014 -20.52477 -18.35029 -16.90444 -16.52051 -15.60191 -14.73755 -14.14029 -13.67265 -13.20708 -13.01222 -12.80615 -12.51309 -12.23867 -11.91373 -11.57757 -11.38072 -10.88270 -10.80522 -10.55461 -10.09298 -10.04183 -9.74382 -9.31244 -8.50597 -8.21739 -7.99059 -6.27625 -3.95313 3.10381 3.46906 3.51859 3.53032 3.66818 4.61580 4.84011 4.88055 5.18129 5.26473 5.42579 5.50541 5.52287 5.61755 5.77195 5.88597 5.94292 6.09415 6.21480 6.45809 6.70001 6.80232 6.92190 7.49288 7.73498 8.05563 8.29902 8.53919 8.70559 8.96918 9.76803 11.13288 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043148 B = 0.010607 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.766717 B = 2639.085313 C = 3071.882078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.516 3.484 3 O -0.538 6.538 4 N -0.618 5.618 5 C 0.101 3.899 6 C -0.138 4.138 7 C -0.111 4.111 8 C 0.145 3.855 9 H 0.063 0.937 10 C 0.002 3.998 11 C -0.595 4.595 12 H 0.048 0.952 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 1.072 2.928 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.285 1.285 19 H 0.087 0.913 20 H 0.088 0.912 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -7.922 6.410 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.305 3.695 3 O -0.414 6.414 4 N -0.353 5.353 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.149 4.149 8 C 0.043 3.957 9 H 0.081 0.919 10 C -0.035 4.035 11 C -0.634 4.634 12 H 0.067 0.933 13 C -0.190 4.190 14 N -0.550 5.550 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.211 1.211 19 H 0.105 0.895 20 H 0.107 0.893 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.468 -6.916 5.674 12.318 hybrid contribution -1.535 -0.443 0.750 1.765 sum -10.003 -7.359 6.423 13.981 Atomic orbital electron populations 1.21879 0.92581 1.04297 1.03987 1.20339 0.89853 0.82624 0.76733 1.90750 1.70506 1.30661 1.49530 1.48831 1.08831 1.05171 1.72432 1.22256 0.96580 0.83068 1.00380 1.22817 0.96029 0.98323 1.00402 1.22566 0.95751 0.94031 1.02590 1.21752 0.77427 0.95541 1.01002 0.91921 1.19577 0.95853 0.96427 0.91684 1.21935 0.91000 1.45645 1.04784 0.93334 1.25816 1.06521 0.93668 0.92970 1.70720 1.14901 1.42967 1.26438 0.83513 0.74554 0.76245 0.75649 1.21520 1.21518 1.21077 0.89455 0.89312 0.90668 0.91319 0.91736 0.91200 0.90431 0.90286 0.90680 0.95578 0.97526 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.72 36.01 0.35 -1.79 16 2 C 0.52 9.99 7.77 -10.99 -0.09 9.91 16 3 O -0.54 -13.32 15.89 5.56 0.09 -13.23 16 4 N -0.62 -11.57 3.06 -163.02 -0.50 -12.07 16 5 C 0.10 1.37 6.34 -2.53 -0.02 1.35 16 6 C -0.14 -1.80 7.09 -24.58 -0.17 -1.97 16 7 C -0.11 -1.99 6.03 -24.90 -0.15 -2.14 16 8 C 0.14 3.17 2.87 -66.95 -0.19 2.98 16 9 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 10 C 0.00 0.06 3.80 -27.88 -0.11 -0.04 16 11 C -0.59 -17.50 8.65 -34.44 -0.30 -17.80 16 12 H 0.05 1.38 7.75 -52.49 -0.41 0.98 16 13 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 14 N -0.91 -29.37 13.65 55.43 0.76 -28.62 16 15 Si 1.07 26.22 29.90 -169.99 -5.08 21.13 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 20 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 21 H 0.07 0.78 6.99 -51.93 -0.36 0.41 16 22 H 0.07 0.72 7.35 -51.93 -0.38 0.34 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.52 7.76 -51.93 -0.40 1.12 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.03 0.81 6.55 -51.93 -0.34 0.47 16 29 H 0.01 0.19 7.69 -51.93 -0.40 -0.21 16 30 H 0.27 8.77 7.19 -40.82 -0.29 8.47 16 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -35.37 249.83 -6.08 -41.46 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.34 Total: -3.27 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.77 Total: -9.18 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.26 Total: -40.68 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.08 Total: 21.13 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -35.37 -6.08 -41.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.126 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds