Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00007 * 2 1 4 4 C 1.50700 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47302 * 185.44934 * 4 2 1 6 6 H 1.09005 * 109.87165 * 304.82623 * 5 4 2 7 7 C 1.54319 * 109.88275 * 65.84192 * 5 4 2 8 8 C 1.55159 * 102.94428 * 141.61077 * 7 5 4 9 9 C 1.54910 * 101.57864 * 324.50143 * 8 7 5 10 10 N 1.47014 * 109.88383 * 183.65145 * 5 4 2 11 11 C 1.36940 * 125.65046 * 61.61863 * 10 5 4 12 12 H 1.08005 * 119.99793 * 14.65922 * 11 10 5 13 13 C 1.38813 * 120.00274 * 194.65671 * 11 10 5 14 14 N 1.31614 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46992 * 120.00226 * 15 13 11 18 18 H 1.48507 * 109.47215 * 240.00232 * 15 13 11 19 19 H 1.09001 * 109.47108 * 89.99788 * 1 2 3 20 20 H 1.08995 * 109.46777 * 329.99816 * 1 2 3 21 21 H 1.09002 * 109.46831 * 209.99845 * 1 2 3 22 22 H 1.09006 * 109.46734 * 305.44841 * 4 2 1 23 23 H 1.08996 * 109.47358 * 65.44422 * 4 2 1 24 24 H 1.09000 * 110.72326 * 259.97561 * 7 5 4 25 25 H 1.09006 * 110.72252 * 23.06836 * 7 5 4 26 26 H 1.08999 * 111.00244 * 82.56972 * 8 7 5 27 27 H 1.08999 * 111.00577 * 206.42587 * 8 7 5 28 28 H 1.09003 * 110.36423 * 155.84526 * 9 8 7 29 29 H 1.09004 * 110.36361 * 278.05391 * 9 8 7 30 30 H 0.96996 * 119.99873 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7592 -1.0289 0.1365 6 1 4.0836 -0.3465 -0.6492 7 6 4.0550 -0.4141 1.5207 8 6 5.4001 -1.0790 1.9160 9 6 5.2334 -2.4979 1.3170 10 7 4.5100 -2.2898 0.0494 11 6 4.5334 -3.1319 -1.0302 12 1 4.1712 -2.7909 -1.9889 13 6 5.0225 -4.4236 -0.8925 14 7 5.4634 -4.8393 0.2758 15 14 5.0536 -5.5725 -2.3651 16 1 4.5062 -4.8694 -3.5531 17 1 6.4525 -5.9893 -2.6383 18 1 4.2273 -6.7718 -2.0749 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8899 0.5138 21 1 -0.3633 -0.8900 0.5138 22 1 1.9260 -1.9181 0.8364 23 1 2.0724 -1.8329 -0.9355 24 1 4.1667 0.6676 1.4464 25 1 3.2707 -0.6713 2.2326 26 1 6.2421 -0.5587 1.4595 27 1 5.5107 -1.1228 2.9995 28 1 6.2085 -2.9468 1.1281 29 1 4.6506 -3.1274 1.9894 30 1 5.8049 -5.7420 0.3721 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086497619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = -24.148218 kcal Electronic energy + Delta-G solvation = -12865.742989 eV Core-core repulsion = 10661.513354 eV Total energy + Delta-G solvation = -2204.229635 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23076 -37.05954 -32.54956 -31.27001 -29.54166 -28.92357 -25.16628 -24.15197 -20.19822 -19.78662 -18.77047 -16.74747 -15.64263 -14.94812 -14.74626 -14.51827 -13.85222 -13.64706 -12.78731 -12.21148 -12.01073 -11.90547 -11.77459 -11.38161 -11.13560 -10.89124 -10.78793 -10.08039 -9.96787 -9.81174 -9.69385 -9.62633 -9.14600 -8.56111 -6.75004 -5.73464 -3.08788 2.37431 3.38556 3.44764 3.46918 4.42334 4.57761 5.27100 5.41889 5.47458 5.55590 5.62761 5.75407 5.78661 5.95528 6.08628 6.19307 6.27014 6.45394 6.58786 6.63143 6.82160 6.85836 7.20748 7.58382 7.66187 7.83017 7.93123 8.31396 9.22028 9.83477 10.53922 11.38854 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037467 B = 0.011667 C = 0.009507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.139780 B = 2399.333719 C = 2944.459261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.354 3.646 3 O -0.466 6.466 4 C -0.180 4.180 5 C 0.170 3.830 6 H 0.039 0.961 7 C -0.120 4.120 8 C -0.151 4.151 9 C 0.173 3.827 10 N -0.597 5.597 11 C -0.228 4.228 12 H 0.074 0.926 13 C -0.005 4.005 14 N -0.917 5.917 15 Si 0.909 3.091 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.290 1.290 19 H 0.090 0.910 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 6.007 1.453 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.230 3.770 3 O -0.341 6.341 4 C -0.219 4.219 5 C 0.062 3.938 6 H 0.057 0.943 7 C -0.158 4.158 8 C -0.189 4.189 9 C 0.048 3.952 10 N -0.321 5.321 11 C -0.357 4.357 12 H 0.092 0.908 13 C -0.202 4.202 14 N -0.563 5.563 15 Si 0.739 3.261 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.217 1.217 19 H 0.108 0.892 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.476 6.325 1.402 9.160 hybrid contribution -0.203 -0.887 -0.743 1.174 sum -6.678 5.438 0.660 8.638 Atomic orbital electron populations 1.22332 0.95785 1.04094 1.04107 1.24884 0.91405 0.91127 0.69588 1.90346 1.72062 1.35436 1.36233 1.22747 0.99215 0.95481 1.04496 1.20749 0.88447 0.89234 0.95358 0.94318 1.22532 0.97530 0.99144 0.96611 1.23028 0.96575 1.00109 0.99209 1.21404 0.97569 0.90014 0.86196 1.44587 1.51724 1.21597 1.14184 1.19028 1.37160 0.91517 0.87969 0.90784 1.24908 1.01636 0.96835 0.96836 1.69956 1.46968 1.17480 1.21936 0.86095 0.77326 0.80950 0.81708 1.20443 1.21763 1.21719 0.89193 0.90436 0.89933 0.89142 0.88427 0.91925 0.92684 0.92419 0.92535 0.91272 0.95792 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.34 10.25 36.01 0.37 -1.97 16 2 C 0.35 5.63 6.97 -29.03 -0.20 5.43 16 3 O -0.47 -8.77 15.68 6.00 0.09 -8.67 16 4 C -0.18 -3.29 5.11 -27.88 -0.14 -3.43 16 5 C 0.17 3.68 2.80 -66.96 -0.19 3.49 16 6 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 7 C -0.12 -2.33 5.48 -24.90 -0.14 -2.47 16 8 C -0.15 -3.03 7.09 -24.58 -0.17 -3.21 16 9 C 0.17 4.29 5.41 -2.53 -0.01 4.28 16 10 N -0.60 -15.34 3.13 -162.57 -0.51 -15.85 16 11 C -0.23 -6.30 9.74 -15.06 -0.15 -6.45 16 12 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 13 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 14 N -0.92 -26.81 10.58 55.49 0.59 -26.22 16 15 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 20 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 22 H 0.09 1.62 8.06 -51.93 -0.42 1.20 16 23 H 0.10 1.83 7.88 -51.93 -0.41 1.42 16 24 H 0.06 1.17 7.76 -51.93 -0.40 0.77 16 25 H 0.05 1.00 7.79 -51.93 -0.40 0.60 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 29 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 249.78 15.07 3.76 3.76 Total: -1.00 -30.63 249.78 -6.30 -36.92 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.48 Total: -2.25 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.73 Total: -4.57 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.08 Total: -42.07 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.63 -6.30 -36.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086497619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.776 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds