Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00007 * 2 1 4 4 C 1.50700 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47302 * 185.44934 * 4 2 1 6 6 H 1.09005 * 109.87165 * 304.82623 * 5 4 2 7 7 C 1.54319 * 109.88275 * 65.84192 * 5 4 2 8 8 C 1.55159 * 102.94428 * 141.61077 * 7 5 4 9 9 C 1.54910 * 101.57864 * 324.50143 * 8 7 5 10 10 N 1.47014 * 109.88383 * 183.65145 * 5 4 2 11 11 C 1.36940 * 125.65046 * 61.61863 * 10 5 4 12 12 H 1.08005 * 119.99793 * 14.65922 * 11 10 5 13 13 C 1.38813 * 120.00274 * 194.65671 * 11 10 5 14 14 N 1.31614 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46992 * 120.00226 * 15 13 11 18 18 H 1.48507 * 109.47215 * 240.00232 * 15 13 11 19 19 H 1.09001 * 109.47108 * 89.99788 * 1 2 3 20 20 H 1.08995 * 109.46777 * 329.99816 * 1 2 3 21 21 H 1.09002 * 109.46831 * 209.99845 * 1 2 3 22 22 H 1.09006 * 109.46734 * 305.44841 * 4 2 1 23 23 H 1.08996 * 109.47358 * 65.44422 * 4 2 1 24 24 H 1.09000 * 110.72326 * 259.97561 * 7 5 4 25 25 H 1.09006 * 110.72252 * 23.06836 * 7 5 4 26 26 H 1.08999 * 111.00244 * 82.56972 * 8 7 5 27 27 H 1.08999 * 111.00577 * 206.42587 * 8 7 5 28 28 H 1.09003 * 110.36423 * 155.84526 * 9 8 7 29 29 H 1.09004 * 110.36361 * 278.05391 * 9 8 7 30 30 H 0.96996 * 119.99873 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7592 -1.0289 0.1365 6 1 4.0836 -0.3465 -0.6492 7 6 4.0550 -0.4141 1.5207 8 6 5.4001 -1.0790 1.9160 9 6 5.2334 -2.4979 1.3170 10 7 4.5100 -2.2898 0.0494 11 6 4.5334 -3.1319 -1.0302 12 1 4.1712 -2.7909 -1.9889 13 6 5.0225 -4.4236 -0.8925 14 7 5.4634 -4.8393 0.2758 15 14 5.0536 -5.5725 -2.3651 16 1 4.5062 -4.8694 -3.5531 17 1 6.4525 -5.9893 -2.6383 18 1 4.2273 -6.7718 -2.0749 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8899 0.5138 21 1 -0.3633 -0.8900 0.5138 22 1 1.9260 -1.9181 0.8364 23 1 2.0724 -1.8329 -0.9355 24 1 4.1667 0.6676 1.4464 25 1 3.2707 -0.6713 2.2326 26 1 6.2421 -0.5587 1.4595 27 1 5.5107 -1.1228 2.9995 28 1 6.2085 -2.9468 1.1281 29 1 4.6506 -3.1274 1.9894 30 1 5.8049 -5.7420 0.3721 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086497619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = -43.052967 kcal Electronic energy + Delta-G solvation = -12866.562761 eV Core-core repulsion = 10661.513354 eV Total energy + Delta-G solvation = -2205.049407 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65585 -38.78519 -34.56684 -32.72277 -31.22842 -30.46458 -26.89838 -26.04163 -21.96397 -21.46384 -20.23320 -18.73132 -17.30069 -16.56195 -16.19673 -16.04401 -15.61969 -15.21651 -14.32300 -13.89642 -13.66509 -13.39920 -13.02904 -12.93153 -12.81130 -12.74503 -12.59955 -11.95935 -11.80650 -11.65043 -11.43620 -11.39389 -10.68575 -10.48810 -8.80526 -7.85947 -5.23498 1.11362 1.46748 1.47408 1.57878 2.49366 3.20680 3.35558 3.82436 3.99817 4.06034 4.24287 4.33360 4.49825 4.55163 4.68489 4.77957 4.82983 4.99049 4.99855 5.14618 5.24587 5.27214 5.48662 5.55500 5.64594 5.76143 6.24411 6.67733 7.10845 7.78372 8.47537 9.25768 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037467 B = 0.011667 C = 0.009507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.139780 B = 2399.333719 C = 2944.459261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.362 3.638 3 O -0.498 6.498 4 C -0.176 4.176 5 C 0.160 3.840 6 H 0.020 0.980 7 C -0.109 4.109 8 C -0.138 4.138 9 C 0.177 3.823 10 N -0.617 5.617 11 C -0.238 4.238 12 H 0.076 0.924 13 C -0.061 4.061 14 N -0.947 5.947 15 Si 0.976 3.024 16 H -0.266 1.266 17 H -0.295 1.295 18 H -0.289 1.289 19 H 0.109 0.891 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.002 0.998 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 6.759 1.306 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.240 3.760 3 O -0.375 6.375 4 C -0.215 4.215 5 C 0.054 3.946 6 H 0.038 0.962 7 C -0.147 4.147 8 C -0.176 4.176 9 C 0.052 3.948 10 N -0.341 5.341 11 C -0.367 4.367 12 H 0.094 0.906 13 C -0.255 4.255 14 N -0.595 5.595 15 Si 0.804 3.196 16 H -0.190 1.190 17 H -0.222 1.222 18 H -0.216 1.216 19 H 0.128 0.872 20 H 0.109 0.891 21 H 0.120 0.880 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.086 7.105 1.250 10.836 hybrid contribution 0.310 -1.085 -0.706 1.331 sum -7.776 6.020 0.544 9.849 Atomic orbital electron populations 1.22274 0.91289 1.05757 1.05807 1.25074 0.93523 0.89157 0.68198 1.90348 1.73208 1.35972 1.37926 1.22606 0.97143 0.97378 1.04403 1.20888 0.90310 0.87239 0.96206 0.96250 1.22479 0.97345 0.99457 0.95413 1.22921 0.97216 0.96792 1.00710 1.21204 0.95200 0.92342 0.86022 1.44844 1.52979 1.22375 1.13936 1.19336 1.36477 0.92056 0.88808 0.90612 1.25705 1.01855 0.98383 0.99527 1.70153 1.48070 1.17451 1.23862 0.85057 0.76839 0.78731 0.78979 1.19014 1.22182 1.21601 0.87248 0.89064 0.88000 0.88653 0.89137 0.90785 0.91122 0.92260 0.89648 0.94870 0.98019 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 10.25 71.24 0.73 -2.94 16 2 C 0.36 10.70 6.97 29.10 0.20 10.90 16 3 O -0.50 -17.83 15.68 -1.46 -0.02 -17.85 16 4 C -0.18 -6.22 5.11 29.85 0.15 -6.06 16 5 C 0.16 6.87 2.80 45.34 0.13 7.00 16 6 H 0.02 0.91 7.90 -2.38 -0.02 0.89 16 7 C -0.11 -4.06 5.48 31.78 0.17 -3.88 16 8 C -0.14 -5.41 7.09 31.99 0.23 -5.19 16 9 C 0.18 8.97 5.41 86.86 0.47 9.44 16 10 N -0.62 -32.11 3.13 -668.27 -2.09 -34.20 16 11 C -0.24 -13.28 9.74 84.03 0.82 -12.46 16 12 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 13 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 14 N -0.95 -56.78 10.58 21.65 0.23 -56.56 16 15 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 19 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 21 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16 22 H 0.10 3.27 8.06 -2.38 -0.02 3.25 16 23 H 0.09 3.32 7.88 -2.39 -0.02 3.30 16 24 H 0.07 2.61 7.76 -2.39 -0.02 2.59 16 25 H 0.07 2.40 7.79 -2.38 -0.02 2.38 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.03 1.88 6.93 -2.39 -0.02 1.87 16 29 H 0.00 0.10 8.06 -2.38 -0.02 0.08 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -66.67 249.78 4.61 -62.06 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.10 Total: 5.28 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 3.37 Total: -6.21 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.86 Total: -90.75 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.02 Total: -17.85 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.67 4.61 -62.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086497619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.011 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds