Wall clock time and date at job start Mon Mar 30 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99586 * 2 1 4 4 C 1.50696 * 109.47470 * 66.04298 * 3 2 1 5 5 H 1.08003 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99956 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 60.00735 * 8 6 4 10 10 H 1.48503 * 109.47399 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47295 * 300.00832 * 8 6 4 12 12 C 1.46895 * 110.99851 * 236.04585 * 2 1 3 13 13 H 1.08997 * 110.74408 * 61.97710 * 12 2 1 14 14 C 1.54985 * 110.83496 * 298.31600 * 12 2 1 15 15 C 1.54276 * 103.75198 * 204.70834 * 14 12 2 16 16 C 1.51448 * 106.85103 * 23.12420 * 15 14 12 17 17 O 1.20762 * 126.34398 * 180.37990 * 16 15 14 18 18 C 1.51845 * 107.31693 * 0.35830 * 16 15 14 19 19 H 1.08994 * 109.47221 * 60.00212 * 1 2 3 20 20 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47356 * 300.00225 * 1 2 3 22 22 H 1.09001 * 109.47165 * 306.04272 * 3 2 1 23 23 H 1.09004 * 109.46739 * 186.04938 * 3 2 1 24 24 H 0.97000 * 119.99806 * 0.02562 * 7 6 4 25 25 H 1.09004 * 110.56879 * 323.27489 * 14 12 2 26 26 H 1.08994 * 110.56681 * 86.14254 * 14 12 2 27 27 H 1.08994 * 109.98576 * 263.77630 * 15 14 12 28 28 H 1.09003 * 109.98499 * 142.46872 * 15 14 12 29 29 H 1.09003 * 110.43824 * 217.47618 * 18 16 15 30 30 H 1.08999 * 110.44168 * 94.94834 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0745 1.5114 2.0488 6 6 2.0275 3.3493 1.5287 7 7 2.7126 4.0017 0.6152 8 14 1.5836 4.1867 3.1384 9 1 2.1755 3.4290 4.2702 10 1 2.1156 5.5731 3.1384 11 1 0.1064 4.2237 3.2863 12 6 1.9954 -0.7660 -1.1376 13 1 1.6866 -0.3167 -2.0814 14 6 1.5515 -2.2487 -1.0564 15 6 2.6316 -2.9995 -1.8625 16 6 3.8683 -2.1253 -1.8599 17 8 4.9216 -2.3740 -2.3956 18 6 3.5383 -0.8778 -1.0595 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.5610 1.9274 -0.8310 23 1 3.0797 1.3445 -0.1083 24 1 2.9428 3.5670 -0.2208 25 1 1.5406 -2.5891 -0.0210 26 1 0.5712 -2.3805 -1.5143 27 1 2.2900 -3.1585 -2.8852 28 1 2.8512 -3.9567 -1.3896 29 1 4.0067 -0.0022 -1.5090 30 1 3.8598 -0.9936 -0.0244 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086618060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:59 Heat of formation + Delta-G solvation = -67.790194 kcal Electronic energy + Delta-G solvation = -12611.596503 eV Core-core repulsion = 10405.474410 eV Total energy + Delta-G solvation = -2206.122094 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.92126 -38.84695 -35.98610 -34.34376 -30.17346 -29.02432 -27.21934 -25.95388 -23.49447 -21.05055 -20.39375 -18.87849 -17.51237 -17.20819 -16.19337 -15.85241 -15.56004 -15.25130 -14.90359 -14.48443 -14.19207 -13.95980 -13.34763 -12.94611 -12.72936 -12.50977 -12.45359 -12.31351 -11.93963 -11.77710 -11.66279 -10.76274 -10.61685 -10.53939 -9.14909 -8.67427 -6.38059 0.82177 1.54136 1.62538 1.81711 2.56377 2.95058 3.15175 3.33301 3.50195 3.75844 4.08387 4.25496 4.32788 4.40671 4.52495 4.65871 4.68838 4.85998 4.92172 4.94070 4.99883 5.10382 5.18473 5.27758 5.79984 5.98217 6.32863 6.41086 6.44811 6.64565 7.42624 8.71376 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053752 B = 0.008594 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.782822 B = 3257.233543 C = 3591.579655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.532 5.532 3 C 0.190 3.810 4 C -0.598 4.598 5 H 0.058 0.942 6 C -0.040 4.040 7 N -0.940 5.940 8 Si 1.121 2.879 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.072 3.928 13 H 0.040 0.960 14 C -0.098 4.098 15 C -0.164 4.164 16 C 0.379 3.621 17 O -0.489 6.489 18 C -0.178 4.178 19 H 0.007 0.993 20 H 0.093 0.907 21 H 0.055 0.945 22 H -0.048 1.048 23 H 0.005 0.995 24 H 0.252 0.748 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 -12.829 -2.388 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.063 3.937 4 C -0.636 4.636 5 H 0.076 0.924 6 C -0.237 4.237 7 N -0.578 5.578 8 Si 0.942 3.058 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.036 4.036 13 H 0.058 0.942 14 C -0.136 4.136 15 C -0.201 4.201 16 C 0.257 3.743 17 O -0.365 6.365 18 C -0.216 4.216 19 H 0.026 0.974 20 H 0.112 0.888 21 H 0.074 0.926 22 H -0.030 1.030 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.082 0.918 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.913 -11.792 -1.402 12.503 hybrid contribution -0.066 -0.388 -1.813 1.855 sum -3.980 -12.179 -3.215 13.210 Atomic orbital electron populations 1.22241 0.86857 1.01923 0.99810 1.62065 1.08578 1.14223 1.40758 1.19591 0.93826 0.85343 0.94935 1.22320 1.38247 1.00044 1.02999 0.92368 1.27420 0.93700 0.96035 1.06555 1.70935 1.38497 1.40315 1.08039 0.82887 0.77077 0.75022 0.70861 1.19481 1.21182 1.19253 1.22581 0.92742 0.96283 0.92041 0.94244 1.22352 0.98817 0.90542 1.01876 1.22612 0.92974 1.00284 1.04264 1.25230 0.87842 0.87774 0.73427 1.90385 1.29773 1.76203 1.40185 1.22938 0.97866 0.98204 1.02610 0.97394 0.88847 0.92639 1.03041 0.97683 0.93881 0.89338 0.88472 0.86211 0.85670 0.91764 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.19 127.69 1.17 2.58 16 2 N -0.53 -21.61 4.65 -893.83 -4.15 -25.76 16 3 C 0.19 9.86 3.91 85.56 0.33 10.20 16 4 C -0.60 -33.78 8.51 25.60 0.22 -33.56 16 5 H 0.06 3.22 7.10 -2.91 -0.02 3.20 16 6 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 7 N -0.94 -58.52 13.65 21.45 0.29 -58.22 16 8 Si 1.12 50.13 29.90 68.60 2.05 52.18 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 C 0.07 2.33 2.61 46.24 0.12 2.45 16 13 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.10 -2.09 5.27 31.71 0.17 -1.93 16 15 C -0.16 -3.08 6.69 30.52 0.20 -2.88 16 16 C 0.38 10.83 7.88 29.71 0.23 11.06 16 17 O -0.49 -17.11 17.99 -1.46 -0.03 -17.13 16 18 C -0.18 -5.93 5.13 30.86 0.16 -5.77 16 19 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 20 H 0.09 2.48 6.93 -2.39 -0.02 2.47 16 21 H 0.05 2.18 6.86 -2.38 -0.02 2.16 16 22 H -0.05 -2.71 7.99 -2.39 -0.02 -2.73 16 23 H 0.01 0.29 6.51 -2.39 -0.02 0.27 16 24 H 0.25 15.94 7.22 -92.71 -0.67 15.27 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.10 1.63 7.92 -2.39 -0.02 1.61 16 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 2.40 7.75 -2.39 -0.02 2.39 16 30 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -68.76 249.30 2.44 -66.31 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.21 Total: 2.34 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 3.07 Total: -19.71 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -3.86 Total: -83.98 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.03 Total: -17.13 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -68.76 2.44 -66.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.475 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds