Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99894 * 2 1 4 4 C 1.50702 * 109.46770 * 293.94717 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.46909 * 110.99555 * 123.94516 * 2 1 3 13 13 H 1.08990 * 110.51046 * 297.35138 * 12 2 1 14 14 C 1.54984 * 110.56503 * 60.26657 * 12 2 1 15 15 C 1.54895 * 102.32899 * 155.64699 * 14 12 2 16 16 C 1.51835 * 104.43493 * 322.37306 * 15 14 12 17 17 O 1.20760 * 126.34252 * 203.80814 * 16 15 14 18 18 C 1.51447 * 107.31964 * 23.78938 * 16 15 14 19 19 H 1.09000 * 109.46747 * 60.00541 * 1 2 3 20 20 H 1.09001 * 109.46627 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47329 * 300.00238 * 1 2 3 22 22 H 1.09004 * 109.47258 * 173.95041 * 3 2 1 23 23 H 1.08994 * 109.47601 * 53.94633 * 3 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.83617 * 273.85406 * 14 12 2 26 26 H 1.09002 * 110.83564 * 37.43730 * 14 12 2 27 27 H 1.08997 * 110.44103 * 203.63502 * 15 14 12 28 28 H 1.09000 * 110.43893 * 81.11259 * 15 14 12 29 29 H 1.08995 * 109.99148 * 240.29582 * 18 16 15 30 30 H 1.09006 * 110.02035 * 119.00759 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0224 3.3511 -1.5265 7 7 2.7075 4.0035 -0.6130 8 14 1.5714 4.1909 -3.1329 9 1 0.8045 3.2481 -3.9862 10 1 0.7407 5.3888 -2.8491 11 1 2.8101 4.6039 -3.8404 12 6 1.9954 -0.7659 1.1378 13 1 1.6944 -0.3066 2.0793 14 6 1.5186 -2.2390 1.0698 15 6 2.6094 -2.9777 1.8845 16 6 3.9006 -2.2668 1.5199 17 8 5.0149 -2.7272 1.5883 18 6 3.5322 -0.8736 1.0541 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0798 1.3444 0.1083 23 1 1.5611 1.9274 0.8308 24 1 2.9789 4.9209 -0.7736 25 1 0.5412 -2.3522 1.5388 26 1 1.4984 -2.5927 0.0389 27 1 2.6571 -4.0269 1.5930 28 1 2.4134 -2.8869 2.9529 29 1 3.8605 -0.7257 0.0253 30 1 3.9937 -0.1290 1.7028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086618061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -42.684911 kcal Electronic energy + Delta-G solvation = -12586.426266 eV Core-core repulsion = 10381.392819 eV Total energy + Delta-G solvation = -2205.033447 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.54922 -37.25356 -34.14001 -32.27135 -28.85713 -27.49932 -25.77151 -24.32795 -21.46900 -19.69987 -18.88840 -16.49782 -16.11188 -15.59162 -14.77267 -14.47468 -14.01457 -13.58779 -13.29152 -12.98672 -12.47475 -11.97836 -11.74415 -11.33867 -11.17103 -10.95838 -10.86437 -10.66101 -10.55439 -10.36054 -9.78631 -9.26511 -9.19854 -8.45792 -7.32150 -6.05365 -4.06589 2.13101 3.29513 3.37206 3.41678 4.31199 4.42931 4.68122 4.90088 5.01430 5.29972 5.33936 5.57341 5.57908 5.76707 5.86479 6.03481 6.06403 6.14443 6.29367 6.37206 6.51228 6.71262 7.25529 7.29584 7.67175 7.77465 8.04892 8.14638 8.51028 9.01343 9.57856 11.05546 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052580 B = 0.008596 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.393358 B = 3256.597852 C = 3564.198322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.188 3.812 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.082 3.918 13 H 0.044 0.956 14 C -0.112 4.112 15 C -0.182 4.182 16 C 0.374 3.626 17 O -0.459 6.459 18 C -0.176 4.176 19 H 0.074 0.926 20 H 0.047 0.953 21 H 0.012 0.988 22 H 0.034 0.966 23 H -0.009 1.009 24 H 0.261 0.739 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -9.788 4.124 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.259 5.259 3 C 0.063 3.937 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.028 4.028 13 H 0.061 0.939 14 C -0.149 4.149 15 C -0.220 4.220 16 C 0.250 3.750 17 O -0.333 6.333 18 C -0.213 4.213 19 H 0.092 0.908 20 H 0.066 0.934 21 H 0.030 0.970 22 H 0.052 0.948 23 H 0.009 0.991 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.370 -10.070 3.756 11.006 hybrid contribution -0.552 1.146 -0.042 1.273 sum -2.922 -8.923 3.715 10.098 Atomic orbital electron populations 1.22201 0.88634 0.99336 1.00919 1.62275 1.07051 1.17939 1.38640 1.19802 0.95744 0.81458 0.96678 1.21201 1.34884 0.96815 1.01734 0.91782 1.24997 0.95318 0.97384 0.96983 1.69967 1.38444 1.11343 1.34031 0.86449 0.78181 0.79320 0.83512 1.19662 1.21135 1.21007 1.22268 0.92919 0.93791 0.93773 0.93860 1.22533 0.97078 0.94649 1.00680 1.22918 0.95746 1.01092 1.02248 1.25042 0.89007 0.90063 0.70910 1.90381 1.26461 1.72717 1.43787 1.22698 0.97590 0.95934 1.05114 0.90761 0.93414 0.96979 0.94793 0.99145 0.92969 0.91002 0.89838 0.89375 0.88218 0.86754 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.17 60.07 0.55 1.24 16 2 N -0.53 -10.89 4.58 -234.26 -1.07 -11.96 16 3 C 0.19 4.73 4.57 -4.98 -0.02 4.71 16 4 C -0.51 -13.97 8.52 -34.44 -0.29 -14.27 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.37 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.08 1.35 2.60 -65.99 -0.17 1.18 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.11 -1.43 5.25 -24.68 -0.13 -1.56 16 15 C -0.18 -2.12 6.72 -26.32 -0.18 -2.30 16 16 C 0.37 5.67 7.88 -28.11 -0.22 5.45 16 17 O -0.46 -8.30 17.99 6.00 0.11 -8.19 16 18 C -0.18 -2.90 5.05 -26.84 -0.14 -3.04 16 19 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16 20 H 0.05 0.72 6.86 -51.93 -0.36 0.36 16 21 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.03 0.90 6.74 -51.93 -0.35 0.55 16 23 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 2.11 7.79 -51.93 -0.40 1.70 16 30 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 250.48 15.07 3.77 3.77 Total: -1.00 -30.21 250.48 -6.52 -36.72 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.34 Total: -3.94 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.70 Total: -7.16 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.34 Total: -37.61 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.11 Total: -8.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.21 -6.52 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.961 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds