Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99894 * 2 1 4 4 C 1.50702 * 109.46770 * 293.94717 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.46909 * 110.99555 * 123.94516 * 2 1 3 13 13 H 1.08990 * 110.51046 * 297.35138 * 12 2 1 14 14 C 1.54984 * 110.56503 * 60.26657 * 12 2 1 15 15 C 1.54895 * 102.32899 * 155.64699 * 14 12 2 16 16 C 1.51835 * 104.43493 * 322.37306 * 15 14 12 17 17 O 1.20760 * 126.34252 * 203.80814 * 16 15 14 18 18 C 1.51447 * 107.31964 * 23.78938 * 16 15 14 19 19 H 1.09000 * 109.46747 * 60.00541 * 1 2 3 20 20 H 1.09001 * 109.46627 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47329 * 300.00238 * 1 2 3 22 22 H 1.09004 * 109.47258 * 173.95041 * 3 2 1 23 23 H 1.08994 * 109.47601 * 53.94633 * 3 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.83617 * 273.85406 * 14 12 2 26 26 H 1.09002 * 110.83564 * 37.43730 * 14 12 2 27 27 H 1.08997 * 110.44103 * 203.63502 * 15 14 12 28 28 H 1.09000 * 110.43893 * 81.11259 * 15 14 12 29 29 H 1.08995 * 109.99148 * 240.29582 * 18 16 15 30 30 H 1.09006 * 110.02035 * 119.00759 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0224 3.3511 -1.5265 7 7 2.7075 4.0035 -0.6130 8 14 1.5714 4.1909 -3.1329 9 1 0.8045 3.2481 -3.9862 10 1 0.7407 5.3888 -2.8491 11 1 2.8101 4.6039 -3.8404 12 6 1.9954 -0.7659 1.1378 13 1 1.6944 -0.3066 2.0793 14 6 1.5186 -2.2390 1.0698 15 6 2.6094 -2.9777 1.8845 16 6 3.9006 -2.2668 1.5199 17 8 5.0149 -2.7272 1.5883 18 6 3.5322 -0.8736 1.0541 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0798 1.3444 0.1083 23 1 1.5611 1.9274 0.8308 24 1 2.9789 4.9209 -0.7736 25 1 0.5412 -2.3522 1.5388 26 1 1.4984 -2.5927 0.0389 27 1 2.6571 -4.0269 1.5930 28 1 2.4134 -2.8869 2.9529 29 1 3.8605 -0.7257 0.0253 30 1 3.9937 -0.1290 1.7028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086618061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -63.254442 kcal Electronic energy + Delta-G solvation = -12587.318228 eV Core-core repulsion = 10381.392819 eV Total energy + Delta-G solvation = -2205.925409 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83755 -38.72585 -35.72009 -34.21815 -30.13150 -29.36620 -27.11791 -26.03930 -23.18105 -21.00971 -20.20427 -18.52515 -17.40028 -16.98481 -16.66782 -15.79249 -15.54180 -15.16213 -14.85801 -14.26314 -13.94463 -13.83256 -13.15975 -13.01129 -12.71414 -12.55061 -12.32965 -12.23428 -12.17282 -11.78758 -11.52186 -11.17353 -10.62804 -10.48536 -8.99910 -8.20177 -6.29466 0.90372 1.40729 1.41853 1.54923 2.40446 3.08606 3.13008 3.43148 3.57317 3.85378 4.25203 4.35750 4.38380 4.51162 4.63278 4.81885 4.84711 4.92616 4.99732 5.13554 5.18207 5.21951 5.34777 5.36932 5.67514 6.07992 6.33042 6.47499 6.69086 6.88060 7.40325 8.90917 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052580 B = 0.008596 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.393358 B = 3256.597852 C = 3564.198322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.203 3.797 4 C -0.522 4.522 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.076 3.924 13 H 0.046 0.954 14 C -0.099 4.099 15 C -0.164 4.164 16 C 0.380 3.620 17 O -0.492 6.492 18 C -0.180 4.180 19 H 0.054 0.946 20 H 0.089 0.911 21 H 0.010 0.990 22 H 0.010 0.990 23 H -0.039 1.039 24 H 0.263 0.737 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -11.369 3.997 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.267 5.267 3 C 0.077 3.923 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.207 1.207 12 C -0.033 4.033 13 H 0.064 0.936 14 C -0.137 4.137 15 C -0.201 4.201 16 C 0.258 3.742 17 O -0.368 6.368 18 C -0.218 4.218 19 H 0.072 0.928 20 H 0.108 0.892 21 H 0.029 0.971 22 H 0.028 0.972 23 H -0.022 1.022 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.843 -11.672 3.632 12.814 hybrid contribution -0.087 1.633 0.031 1.636 sum -3.930 -10.040 3.662 11.386 Atomic orbital electron populations 1.22229 0.87088 1.01675 0.99867 1.62172 1.08486 1.15072 1.40990 1.19435 0.94199 0.83966 0.94733 1.21550 1.34646 0.97317 1.02542 0.91787 1.25912 0.95165 0.98206 1.00565 1.70092 1.39587 1.11762 1.36142 0.85357 0.77988 0.78262 0.79152 1.18608 1.20457 1.20685 1.22414 0.92547 0.95917 0.92396 0.93589 1.22515 0.98796 0.91089 1.01314 1.22877 0.92040 1.01545 1.03647 1.25265 0.89917 0.89297 0.69724 1.90376 1.28130 1.73011 1.45280 1.22695 0.98146 0.97475 1.03465 0.92758 0.89241 0.97128 0.97199 1.02172 0.92805 0.88027 0.90012 0.86887 0.85398 0.89387 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 9.17 127.69 1.17 2.55 16 2 N -0.54 -22.00 4.58 -895.05 -4.10 -26.10 16 3 C 0.20 10.55 4.57 85.56 0.39 10.94 16 4 C -0.52 -29.26 8.52 25.60 0.22 -29.04 16 5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 6 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 7 N -0.94 -56.24 13.29 21.45 0.28 -55.96 16 8 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.08 2.43 2.60 46.03 0.12 2.55 16 13 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.10 -2.17 5.25 31.92 0.17 -2.00 16 15 C -0.16 -3.16 6.72 30.86 0.21 -2.95 16 16 C 0.38 11.04 7.88 29.70 0.23 11.27 16 17 O -0.49 -17.47 17.99 -1.45 -0.03 -17.50 16 18 C -0.18 -6.03 5.05 30.52 0.15 -5.88 16 19 H 0.05 2.11 6.86 -2.39 -0.02 2.09 16 20 H 0.09 2.38 6.86 -2.39 -0.02 2.36 16 21 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 22 H 0.01 0.55 6.74 -2.38 -0.02 0.54 16 23 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 24 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 25 H 0.10 1.70 7.91 -2.39 -0.02 1.69 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 3.41 7.79 -2.39 -0.02 3.40 16 30 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -66.64 250.48 2.42 -64.22 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.11 Total: 1.26 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.13 Total: -12.14 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.81 Total: -82.06 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.03 Total: -17.50 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.64 2.42 -64.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086618061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.965 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds