Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46760 * 55.00438 * 3 2 1 5 5 C 1.50700 * 109.46982 * 175.00264 * 3 2 1 6 6 H 1.08000 * 120.00320 * 120.00324 * 5 3 2 7 7 C 1.37881 * 119.99851 * 300.00394 * 5 3 2 8 8 N 1.31515 * 120.00266 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99768 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47304 * 59.99705 * 9 7 5 11 11 H 1.48503 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46980 * 299.99501 * 9 7 5 13 13 N 1.46497 * 109.46943 * 295.00063 * 3 2 1 14 14 C 1.46768 * 124.34381 * 120.00561 * 13 3 2 15 15 C 1.54487 * 105.46844 * 197.01165 * 14 13 3 16 16 C 1.54619 * 101.76557 * 334.58255 * 15 14 13 17 17 C 1.34413 * 124.35463 * 299.99759 * 13 3 2 18 18 O 1.21283 * 124.94031 * 359.62849 * 17 13 3 19 19 H 1.08993 * 109.46764 * 299.99488 * 1 2 3 20 20 H 1.09000 * 109.47034 * 60.00005 * 1 2 3 21 21 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46905 * 240.00166 * 2 1 3 23 23 H 1.08995 * 109.47225 * 120.00700 * 2 1 3 24 24 H 0.96998 * 120.00288 * 180.02562 * 8 7 5 25 25 H 1.09000 * 110.25007 * 78.01166 * 14 13 3 26 26 H 1.09004 * 110.24485 * 316.00872 * 14 13 3 27 27 H 1.08996 * 110.96729 * 92.70209 * 15 14 13 28 28 H 1.08999 * 110.96649 * 216.46453 * 15 14 13 29 29 H 1.09007 * 110.48907 * 143.47513 * 16 15 14 30 30 H 1.09001 * 110.48711 * 265.98708 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4996 2.2814 1.3820 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6525 2.0975 -1.2518 14 6 0.8076 3.2949 -1.3327 15 6 0.3194 3.3565 -2.7971 16 6 1.4366 2.5828 -3.5347 17 6 2.0249 1.6791 -2.4737 18 8 2.7296 0.7168 -2.6935 19 1 -0.3632 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.8294 -0.0606 2.9501 25 1 1.3897 4.1843 -1.0915 26 1 -0.0416 3.2038 -0.6555 27 1 -0.6418 2.8549 -2.9092 28 1 0.2629 4.3874 -3.1464 29 1 1.0177 1.9921 -4.3495 30 1 2.1917 3.2718 -3.9134 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087031675.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = -43.483836 kcal Electronic energy + Delta-G solvation = -13145.270283 eV Core-core repulsion = 10940.202193 eV Total energy + Delta-G solvation = -2205.068091 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.48511 -35.45537 -34.54137 -31.72036 -30.10746 -26.99511 -26.59623 -23.16662 -21.29219 -20.71778 -18.10517 -16.60948 -15.81481 -15.41655 -14.43974 -14.20628 -13.28914 -13.03169 -12.99818 -12.42903 -12.26170 -12.05841 -11.67868 -11.16903 -11.06135 -10.83838 -10.68373 -10.61089 -10.15861 -9.88477 -9.67430 -9.27387 -8.65943 -8.25305 -7.48676 -6.00271 -4.04990 3.35758 3.39052 3.44475 3.59812 4.14903 4.50581 4.93171 4.97510 5.16523 5.30302 5.59138 5.90283 5.98470 6.05201 6.11346 6.25866 6.29847 6.34454 6.49785 6.92484 6.99214 7.29380 7.36596 7.79194 7.86134 8.12952 8.17509 8.54327 8.94264 9.27179 9.61321 11.04607 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039419 B = 0.013092 C = 0.011546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.153876 B = 2138.230845 C = 2424.457135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.285 3.715 4 H 0.043 0.957 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.599 5.599 14 C 0.101 3.899 15 C -0.131 4.131 16 C -0.160 4.160 17 C 0.509 3.491 18 O -0.531 6.531 19 H 0.041 0.959 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 5.674 -5.833 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.186 3.814 4 H 0.061 0.939 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.332 5.332 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.201 4.201 17 C 0.295 3.705 18 O -0.409 6.409 19 H 0.060 0.940 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.277 5.033 -5.660 9.837 hybrid contribution 0.921 0.086 0.166 0.939 sum -5.356 5.120 -5.494 9.224 Atomic orbital electron populations 1.21781 0.99329 0.99227 0.99588 1.21952 0.91686 1.00007 1.03824 1.18772 0.94683 0.89221 0.78705 0.93919 1.21307 0.91023 1.37471 1.05033 0.92415 1.24859 0.98460 0.95059 0.95554 1.69848 1.35023 1.38920 1.09633 0.86534 0.85363 0.78179 0.77231 1.20373 1.21262 1.20139 1.48751 1.49134 1.27284 1.07999 1.21945 0.94575 0.89490 0.96316 1.22561 0.98332 1.00829 0.95209 1.22378 0.99212 0.99681 0.98819 1.20497 0.80688 0.84875 0.84445 1.90659 1.38003 1.28489 1.83700 0.93984 0.94763 0.94765 0.93017 0.88018 0.92779 0.91956 0.91305 0.90715 0.90176 0.89345 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.80 37.16 0.36 -2.55 16 2 C -0.14 -3.42 5.20 -26.73 -0.14 -3.56 16 3 C 0.29 7.27 2.25 -69.08 -0.16 7.11 16 4 H 0.04 1.13 8.07 -51.93 -0.42 0.71 16 5 C -0.51 -14.58 8.06 -34.44 -0.28 -14.85 16 6 H 0.06 1.72 7.69 -52.49 -0.40 1.32 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.61 11.29 55.43 0.63 -24.98 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.60 -12.90 2.27 -166.16 -0.38 -13.28 16 14 C 0.10 1.61 7.30 -3.12 -0.02 1.59 16 15 C -0.13 -1.64 7.18 -25.10 -0.18 -1.82 16 16 C -0.16 -2.45 6.86 -26.75 -0.18 -2.63 16 17 C 0.51 11.14 7.30 -10.86 -0.08 11.06 16 18 O -0.53 -14.07 15.93 5.56 0.09 -13.98 16 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.03 0.66 7.75 -51.93 -0.40 0.25 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 1.40 6.65 -51.93 -0.35 1.06 16 23 H 0.10 2.80 5.95 -51.93 -0.31 2.49 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 249.15 15.07 3.75 3.75 Total: -1.00 -31.75 249.15 -6.09 -37.84 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.40 Total: -2.58 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.77 Total: -4.00 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.25 Total: -38.26 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.75 -6.09 -37.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087031675.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.642 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds