Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46760 * 55.00438 * 3 2 1 5 5 C 1.50700 * 109.46982 * 175.00264 * 3 2 1 6 6 H 1.08000 * 120.00320 * 120.00324 * 5 3 2 7 7 C 1.37881 * 119.99851 * 300.00394 * 5 3 2 8 8 N 1.31515 * 120.00266 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99768 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47304 * 59.99705 * 9 7 5 11 11 H 1.48503 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46980 * 299.99501 * 9 7 5 13 13 N 1.46497 * 109.46943 * 295.00063 * 3 2 1 14 14 C 1.46768 * 124.34381 * 120.00561 * 13 3 2 15 15 C 1.54487 * 105.46844 * 197.01165 * 14 13 3 16 16 C 1.54619 * 101.76557 * 334.58255 * 15 14 13 17 17 C 1.34413 * 124.35463 * 299.99759 * 13 3 2 18 18 O 1.21283 * 124.94031 * 359.62849 * 17 13 3 19 19 H 1.08993 * 109.46764 * 299.99488 * 1 2 3 20 20 H 1.09000 * 109.47034 * 60.00005 * 1 2 3 21 21 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46905 * 240.00166 * 2 1 3 23 23 H 1.08995 * 109.47225 * 120.00700 * 2 1 3 24 24 H 0.96998 * 120.00288 * 180.02562 * 8 7 5 25 25 H 1.09000 * 110.25007 * 78.01166 * 14 13 3 26 26 H 1.09004 * 110.24485 * 316.00872 * 14 13 3 27 27 H 1.08996 * 110.96729 * 92.70209 * 15 14 13 28 28 H 1.08999 * 110.96649 * 216.46453 * 15 14 13 29 29 H 1.09007 * 110.48907 * 143.47513 * 16 15 14 30 30 H 1.09001 * 110.48711 * 265.98708 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4996 2.2814 1.3820 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6525 2.0975 -1.2518 14 6 0.8076 3.2949 -1.3327 15 6 0.3194 3.3565 -2.7971 16 6 1.4366 2.5828 -3.5347 17 6 2.0249 1.6791 -2.4737 18 8 2.7296 0.7168 -2.6935 19 1 -0.3632 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.8294 -0.0606 2.9501 25 1 1.3897 4.1843 -1.0915 26 1 -0.0416 3.2038 -0.6555 27 1 -0.6418 2.8549 -2.9092 28 1 0.2629 4.3874 -3.1464 29 1 1.0177 1.9921 -4.3495 30 1 2.1917 3.2718 -3.9134 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087031675.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = -64.127157 kcal Electronic energy + Delta-G solvation = -13146.165445 eV Core-core repulsion = 10940.202193 eV Total energy + Delta-G solvation = -2205.963252 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.07548 -37.21875 -36.32657 -33.74292 -31.68575 -28.69571 -28.19992 -25.14114 -22.60239 -22.46211 -19.88250 -18.56373 -17.47571 -17.02001 -16.33312 -15.91476 -14.97330 -14.87103 -14.47183 -14.04450 -13.73514 -13.60724 -13.38043 -13.13467 -12.80059 -12.64016 -12.25880 -12.13584 -11.85400 -11.69557 -11.58542 -11.25679 -10.64174 -10.21323 -9.24326 -8.16293 -6.28715 1.34040 1.37912 1.45044 1.94801 2.35355 2.63196 3.09385 3.67847 3.80242 4.15457 4.40927 4.51636 4.54505 4.67931 4.77900 4.81422 4.89695 5.00209 5.14068 5.21303 5.30778 5.36856 5.49547 5.61858 5.84482 6.15789 6.17943 6.70088 6.83923 7.33664 7.64113 8.86054 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039419 B = 0.013092 C = 0.011546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.153876 B = 2138.230845 C = 2424.457135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.031 0.969 5 C -0.532 4.532 6 H 0.034 0.966 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.608 5.608 14 C 0.089 3.911 15 C -0.110 4.110 16 C -0.148 4.148 17 C 0.487 3.513 18 O -0.594 6.594 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 7.217 -6.598 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.187 3.813 4 H 0.049 0.951 5 C -0.570 4.570 6 H 0.052 0.948 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.339 5.339 14 C -0.034 4.034 15 C -0.147 4.147 16 C -0.188 4.188 17 C 0.275 3.725 18 O -0.476 6.476 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.600 6.625 -6.422 11.953 hybrid contribution 1.321 -0.386 0.415 1.438 sum -6.278 6.239 -6.006 10.697 Atomic orbital electron populations 1.21626 0.95556 1.00669 1.00724 1.21747 0.95009 0.99289 1.00745 1.18424 0.92929 0.89586 0.80401 0.95138 1.21513 0.92938 1.37933 1.04652 0.94757 1.25559 1.02459 0.94737 0.95349 1.69937 1.36376 1.38941 1.09813 0.85683 0.80648 0.78564 0.77160 1.19265 1.19776 1.21235 1.48799 1.49656 1.28685 1.06801 1.22330 0.94296 0.87206 0.99557 1.22606 0.97610 1.03030 0.91499 1.22365 1.00326 0.98928 0.97143 1.21750 0.79888 0.84839 0.85980 1.90609 1.40740 1.31417 1.84812 0.93001 0.93275 0.93239 0.96078 0.90969 0.92539 0.91309 0.89962 0.88901 0.86039 0.87469 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.80 71.98 0.71 -4.45 16 2 C -0.13 -6.65 5.20 30.60 0.16 -6.49 16 3 C 0.29 14.96 2.25 44.25 0.10 15.06 16 4 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 5 C -0.53 -31.39 8.06 25.60 0.21 -31.19 16 6 H 0.03 2.13 7.69 -2.91 -0.02 2.10 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.95 46.37 29.54 68.60 2.03 48.40 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 N -0.61 -25.93 2.27 -798.19 -1.82 -27.75 16 14 C 0.09 2.57 7.30 86.83 0.63 3.21 16 15 C -0.11 -2.21 7.18 31.65 0.23 -1.98 16 16 C -0.15 -4.04 6.86 30.58 0.21 -3.83 16 17 C 0.49 21.19 7.30 87.90 0.64 21.83 16 18 O -0.59 -32.53 15.93 -3.04 -0.05 -32.58 16 19 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 20 H 0.05 1.80 7.75 -2.39 -0.02 1.78 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.02 1.17 6.65 -2.39 -0.02 1.16 16 23 H 0.07 4.12 5.95 -2.39 -0.01 4.10 16 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -72.44 249.15 4.84 -67.60 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.10 Total: 3.53 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.33 Total: -6.33 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.57 Total: -80.61 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.58 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.44 4.84 -67.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087031675.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.477 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds