Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08999 * 110.85538 * 57.33868 * 3 2 1 5 5 C 1.54626 * 110.96967 * 293.55028 * 3 2 1 6 6 C 1.51287 * 104.19384 * 266.67767 * 5 3 2 7 7 O 1.21281 * 124.93882 * 163.78637 * 6 5 3 8 8 N 1.34421 * 110.11450 * 343.74748 * 6 5 3 9 9 C 1.46496 * 124.34784 * 179.56875 * 8 6 5 10 10 C 1.50697 * 109.46999 * 89.97713 * 9 8 6 11 11 H 1.08001 * 120.00173 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00124 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00021 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00005 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46951 * 90.00011 * 14 12 10 16 16 H 1.48497 * 109.46875 * 209.99729 * 14 12 10 17 17 H 1.48495 * 109.46874 * 329.99885 * 14 12 10 18 18 C 1.46764 * 111.30095 * 359.59291 * 8 6 5 19 19 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 23 23 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 24 24 H 1.09003 * 110.49147 * 25.35621 * 5 3 2 25 25 H 1.08996 * 110.48638 * 148.00087 * 5 3 2 26 26 H 1.08995 * 109.47501 * 209.97683 * 9 8 6 27 27 H 1.09005 * 109.47525 * 329.98132 * 9 8 6 28 28 H 0.96995 * 120.00389 * 180.02562 * 13 12 10 29 29 H 1.08998 * 110.24435 * 258.01238 * 18 8 6 30 30 H 1.09005 * 110.24356 * 136.01429 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6511 1.9916 0.8575 5 6 1.6806 2.1565 -1.3236 6 6 2.8978 1.9511 -2.1983 7 8 2.9237 2.1087 -3.4005 8 7 3.9465 1.5695 -1.4489 9 6 5.2797 1.2771 -1.9810 10 6 6.1056 2.5376 -1.9873 11 1 5.6798 3.4640 -1.6311 12 6 7.4045 2.5084 -2.4489 13 7 7.9225 1.3807 -2.8841 14 14 8.4285 4.0708 -2.4561 15 1 9.1526 4.1940 -1.1655 16 1 9.4087 4.0151 -3.5702 17 1 7.5382 5.2452 -2.6383 18 6 3.5840 1.4830 -0.0294 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 0.8024 1.6980 -1.7782 25 1 1.5106 3.2190 -1.1499 26 1 5.7646 0.5282 -1.3548 27 1 5.1895 0.8967 -2.9985 28 1 8.8364 1.3601 -3.2085 29 1 3.9487 2.3589 0.5071 30 1 3.9936 0.5732 0.4097 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087232022.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = -52.146469 kcal Electronic energy + Delta-G solvation = -12655.183683 eV Core-core repulsion = 10449.739952 eV Total energy + Delta-G solvation = -2205.443731 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72524 -36.10109 -34.13303 -32.52998 -30.08148 -27.21560 -26.70505 -23.38196 -22.66647 -20.07535 -18.54491 -16.58217 -15.97837 -15.40240 -14.81183 -14.40654 -14.05345 -13.48632 -13.09827 -12.66350 -12.39243 -12.13299 -11.82198 -11.60817 -11.34712 -10.96117 -10.84389 -10.63959 -10.49426 -10.47039 -10.11454 -9.64104 -8.86584 -8.45339 -7.62665 -6.06539 -4.12054 3.29483 3.35792 3.40008 3.49199 4.11979 4.45273 4.68423 4.82290 4.91480 5.23486 5.28629 5.39366 5.51204 5.63161 5.84188 5.90915 5.97630 6.02660 6.08265 6.20580 6.33532 6.44022 7.01817 7.35745 7.60955 7.90809 8.20251 8.29623 8.87891 9.15920 9.54290 11.01326 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060928 B = 0.008665 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.446074 B = 3230.639330 C = 3302.922426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.103 4.103 4 H 0.089 0.911 5 C -0.155 4.155 6 C 0.507 3.493 7 O -0.546 6.546 8 N -0.599 5.599 9 C 0.254 3.746 10 C -0.531 4.531 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.109 3.891 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -1.489 8.510 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.122 4.122 4 H 0.108 0.892 5 C -0.195 4.195 6 C 0.293 3.707 7 O -0.425 6.425 8 N -0.331 5.331 9 C 0.136 3.864 10 C -0.569 4.569 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.016 4.016 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.026 -1.519 7.774 13.576 hybrid contribution 0.757 0.860 0.064 1.148 sum -10.268 -0.658 7.839 12.935 Atomic orbital electron populations 1.21803 0.95853 1.01447 1.01825 1.21527 0.95740 0.95593 1.02512 1.22223 0.95502 0.96663 0.97771 0.89250 1.22479 0.98616 1.02343 0.96050 1.20624 0.85468 0.77080 0.87540 1.90656 1.84889 1.53020 1.13912 1.48614 1.12260 1.65611 1.06597 1.19209 0.75596 0.96453 0.95156 1.21476 0.97213 0.95437 1.42810 0.92337 1.24954 0.97687 0.96568 0.94932 1.69927 1.15362 1.25643 1.42485 0.86461 0.79853 0.83292 0.77639 1.20566 1.21012 1.19846 1.21997 0.93322 1.01958 0.84288 0.92781 0.92478 0.92886 0.91517 0.91636 0.88845 0.88747 0.94831 0.94114 0.92629 0.91584 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.75 37.16 0.36 -1.09 16 2 C -0.12 -1.34 5.38 -26.73 -0.14 -1.48 16 3 C -0.10 -1.31 3.18 -88.99 -0.28 -1.60 16 4 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.15 -2.36 6.27 -26.74 -0.17 -2.52 16 6 C 0.51 11.15 8.02 -10.86 -0.09 11.06 16 7 O -0.55 -14.57 17.60 5.56 0.10 -14.47 16 8 N -0.60 -13.24 2.92 -173.79 -0.51 -13.75 16 9 C 0.25 6.83 5.68 -5.20 -0.03 6.80 16 10 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 16 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 14 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 18 C 0.11 1.78 6.90 -3.12 -0.02 1.76 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.29 6.27 -51.93 -0.33 0.96 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 1.22 7.93 -51.93 -0.41 0.81 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 LS Contribution 254.55 15.07 3.84 3.84 Total: -1.00 -33.17 254.55 -6.06 -39.23 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -4.41 Total: -4.66 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.79 Total: -1.12 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.23 Total: -39.87 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.17 -6.06 -39.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087232022.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.917 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds