Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 H 1.09005 * 110.85653 * 308.78631 * 3 2 1 5 5 C 1.54626 * 111.00533 * 72.60081 * 3 2 1 6 6 C 1.51284 * 104.25745 * 142.71471 * 5 3 2 7 7 O 1.21289 * 124.94346 * 164.01260 * 6 5 3 8 8 N 1.34413 * 110.11290 * 344.14274 * 6 5 3 9 9 C 1.46505 * 124.35058 * 179.43790 * 8 6 5 10 10 C 1.50703 * 109.47064 * 269.70472 * 9 8 6 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46999 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46942 * 119.99666 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99580 * 14 12 10 18 18 C 1.46763 * 111.30390 * 359.17560 * 8 6 5 19 19 H 1.09004 * 109.47129 * 300.00443 * 1 2 3 20 20 H 1.08997 * 109.46939 * 60.00186 * 1 2 3 21 21 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 22 22 H 1.08990 * 109.47064 * 239.99765 * 2 1 3 23 23 H 1.09003 * 109.46958 * 119.99387 * 2 1 3 24 24 H 1.09006 * 110.48629 * 261.61227 * 5 3 2 25 25 H 1.08998 * 110.48456 * 24.11783 * 5 3 2 26 26 H 1.09002 * 109.47068 * 29.70441 * 9 8 6 27 27 H 1.09001 * 109.47372 * 149.70528 * 9 8 6 28 28 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.25265 * 136.27847 * 18 8 6 30 30 H 1.09001 * 110.24548 * 258.28240 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5677 2.0211 -0.7940 5 6 1.8178 2.1090 1.3775 6 6 3.0442 2.9721 1.5759 7 8 3.1412 3.8644 2.3918 8 7 4.0098 2.6083 0.7146 9 6 5.3255 3.2471 0.6297 10 6 5.2707 4.3803 -0.3622 11 1 4.3482 4.6021 -0.8781 12 6 6.3985 5.1331 -0.6119 13 7 7.5220 4.8626 0.0160 14 14 6.3304 6.5382 -1.8409 15 1 4.9606 6.6354 -2.4061 16 1 6.6759 7.8106 -1.1577 17 1 7.3006 6.2852 -2.9363 18 6 3.5791 1.4848 -0.1258 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.9155 2.7205 1.3643 25 1 1.7541 1.3537 2.1608 26 1 5.6050 3.6349 1.6093 27 1 6.0646 2.5149 0.3044 28 1 8.3156 5.3920 -0.1599 29 1 3.8683 1.6566 -1.1625 30 1 4.0130 0.5535 0.2383 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087232023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = -53.540436 kcal Electronic energy + Delta-G solvation = -12579.053891 eV Core-core repulsion = 10373.549714 eV Total energy + Delta-G solvation = -2205.504178 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64621 -36.14265 -34.20276 -32.59293 -30.12025 -27.17183 -26.73358 -23.34707 -22.49331 -20.23234 -18.58136 -16.57327 -16.06602 -15.48818 -14.49078 -14.36894 -14.26220 -13.33666 -13.02017 -12.91217 -12.57334 -12.08208 -12.00275 -11.40907 -11.34068 -11.01161 -10.81979 -10.71404 -10.56883 -10.41644 -10.12613 -9.62995 -8.86884 -8.46112 -7.63892 -6.07042 -4.12575 3.28748 3.35760 3.39477 3.47416 4.11453 4.44203 4.69961 4.79968 4.89718 5.24702 5.28272 5.38613 5.45985 5.58920 5.84410 5.91551 5.94745 6.01379 6.08989 6.12033 6.27497 6.45060 7.01315 7.35751 7.60178 7.90474 8.19806 8.28927 8.87681 9.14848 9.53826 11.00856 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049647 B = 0.008820 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.843397 B = 3173.928832 C = 3327.768786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.151 4.151 6 C 0.506 3.494 7 O -0.546 6.546 8 N -0.600 5.600 9 C 0.253 3.747 10 C -0.530 4.530 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.108 3.892 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 -10.028 -2.023 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.105 0.895 5 C -0.191 4.191 6 C 0.292 3.708 7 O -0.425 6.425 8 N -0.332 5.332 9 C 0.134 3.866 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.728 3.272 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.016 4.016 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.249 -9.464 -1.596 14.041 hybrid contribution 0.133 0.784 -0.761 1.101 sum -10.116 -8.680 -2.357 13.536 Atomic orbital electron populations 1.21774 0.95767 1.01343 1.02047 1.21505 0.95893 0.95205 1.02322 1.22224 0.95815 0.96721 0.97426 0.89484 1.22432 0.98595 1.00028 0.98047 1.20660 0.85396 0.83657 0.81076 1.90658 1.82205 1.32053 1.37543 1.48642 1.16771 1.32718 1.35041 1.19226 0.76655 0.92366 0.98310 1.21510 0.96641 1.15024 1.23662 0.92246 1.24960 0.95197 0.97562 0.96456 1.69944 1.00906 1.40414 1.42142 0.86408 0.78042 0.82025 0.80768 1.19751 1.20792 1.20888 1.22004 0.93074 0.89898 0.96665 0.92559 0.92697 0.92924 0.91496 0.91665 0.89116 0.88828 0.94062 0.94795 0.92680 0.90489 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.96 16 2 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 3 C -0.10 -1.36 3.12 -88.99 -0.28 -1.64 16 4 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 5 C -0.15 -2.30 5.89 -26.74 -0.16 -2.46 16 6 C 0.51 11.18 8.02 -10.86 -0.09 11.09 16 7 O -0.55 -14.57 17.59 5.55 0.10 -14.48 16 8 N -0.60 -13.35 2.92 -173.78 -0.51 -13.85 16 9 C 0.25 6.80 5.69 -5.19 -0.03 6.78 16 10 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.11 1.78 6.91 -3.12 -0.02 1.76 16 19 H 0.06 0.49 7.74 -51.93 -0.40 0.09 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.24 7.76 -51.93 -0.40 0.84 16 26 H 0.04 1.24 7.92 -51.93 -0.41 0.83 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -33.14 256.58 -6.14 -39.28 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.54 Total: -5.03 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.77 Total: -0.71 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.23 Total: -39.96 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.14 -6.14 -39.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087232023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.260 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds