Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 H 1.09005 * 110.85653 * 308.78631 * 3 2 1 5 5 C 1.54626 * 111.00533 * 72.60081 * 3 2 1 6 6 C 1.51284 * 104.25745 * 142.71471 * 5 3 2 7 7 O 1.21289 * 124.94346 * 164.01260 * 6 5 3 8 8 N 1.34413 * 110.11290 * 344.14274 * 6 5 3 9 9 C 1.46505 * 124.35058 * 179.43790 * 8 6 5 10 10 C 1.50703 * 109.47064 * 269.70472 * 9 8 6 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46999 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46942 * 119.99666 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99580 * 14 12 10 18 18 C 1.46763 * 111.30390 * 359.17560 * 8 6 5 19 19 H 1.09004 * 109.47129 * 300.00443 * 1 2 3 20 20 H 1.08997 * 109.46939 * 60.00186 * 1 2 3 21 21 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 22 22 H 1.08990 * 109.47064 * 239.99765 * 2 1 3 23 23 H 1.09003 * 109.46958 * 119.99387 * 2 1 3 24 24 H 1.09006 * 110.48629 * 261.61227 * 5 3 2 25 25 H 1.08998 * 110.48456 * 24.11783 * 5 3 2 26 26 H 1.09002 * 109.47068 * 29.70441 * 9 8 6 27 27 H 1.09001 * 109.47372 * 149.70528 * 9 8 6 28 28 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.25265 * 136.27847 * 18 8 6 30 30 H 1.09001 * 110.24548 * 258.28240 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5677 2.0211 -0.7940 5 6 1.8178 2.1090 1.3775 6 6 3.0442 2.9721 1.5759 7 8 3.1412 3.8644 2.3918 8 7 4.0098 2.6083 0.7146 9 6 5.3255 3.2471 0.6297 10 6 5.2707 4.3803 -0.3622 11 1 4.3482 4.6021 -0.8781 12 6 6.3985 5.1331 -0.6119 13 7 7.5220 4.8626 0.0160 14 14 6.3304 6.5382 -1.8409 15 1 4.9606 6.6354 -2.4061 16 1 6.6759 7.8106 -1.1577 17 1 7.3006 6.2852 -2.9363 18 6 3.5791 1.4848 -0.1258 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.9155 2.7205 1.3643 25 1 1.7541 1.3537 2.1608 26 1 5.6050 3.6349 1.6093 27 1 6.0646 2.5149 0.3044 28 1 8.3156 5.3920 -0.1599 29 1 3.8683 1.6566 -1.1625 30 1 4.0130 0.5535 0.2383 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087232023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = -75.727298 kcal Electronic energy + Delta-G solvation = -12580.015986 eV Core-core repulsion = 10373.549714 eV Total energy + Delta-G solvation = -2206.466272 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22948 -37.71556 -35.91789 -34.45308 -31.54473 -28.74339 -28.39427 -25.07063 -23.86635 -21.29871 -20.31042 -18.74735 -17.64742 -17.14996 -16.34443 -16.04602 -15.38966 -14.65778 -14.54843 -14.33539 -13.99718 -13.70080 -13.42480 -13.14529 -12.83355 -12.68862 -12.39297 -12.24189 -11.81545 -11.71898 -11.58052 -11.43805 -10.73802 -10.58898 -9.49311 -8.28232 -6.44832 1.34542 1.37045 1.49311 1.74256 2.31157 2.49263 3.00771 3.53096 3.57167 3.85939 4.24508 4.44472 4.60203 4.66062 4.68557 4.77269 4.88068 4.98445 5.01537 5.09107 5.24490 5.29984 5.44458 5.53523 5.59208 5.84366 5.98597 6.53991 6.65004 7.20785 7.41965 8.79132 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049647 B = 0.008820 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.843397 B = 3173.928832 C = 3327.768786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.086 4.086 4 H 0.092 0.908 5 C -0.133 4.133 6 C 0.486 3.514 7 O -0.606 6.606 8 N -0.611 5.611 9 C 0.265 3.735 10 C -0.551 4.551 11 H 0.054 0.946 12 C 0.008 3.992 13 N -0.928 5.928 14 Si 0.973 3.027 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.266 1.266 18 C 0.099 3.901 19 H 0.055 0.945 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.121 0.879 26 H -0.005 1.005 27 H 0.028 0.972 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -11.067 -3.485 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.105 4.105 4 H 0.110 0.890 5 C -0.172 4.172 6 C 0.275 3.725 7 O -0.489 6.489 8 N -0.342 5.342 9 C 0.144 3.856 10 C -0.589 4.589 11 H 0.072 0.928 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.023 4.023 19 H 0.074 0.926 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.139 0.861 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.888 -10.557 -3.085 16.195 hybrid contribution 0.674 1.069 -0.275 1.293 sum -11.214 -9.488 -3.359 15.069 Atomic orbital electron populations 1.21775 0.94556 1.02384 1.02169 1.21487 0.96788 0.92467 1.03447 1.22242 0.93005 0.99131 0.96125 0.88981 1.22423 0.95164 0.99511 1.00146 1.21945 0.87261 0.83515 0.79785 1.90607 1.83588 1.34905 1.39844 1.48730 1.15319 1.33893 1.36212 1.18717 0.79327 0.92212 0.95357 1.21750 0.96722 1.16181 1.24281 0.92787 1.25922 0.94638 1.00229 0.98369 1.70054 1.01662 1.41632 1.43384 0.85291 0.78577 0.78105 0.78380 1.19118 1.20500 1.19080 1.22371 0.95807 0.88546 0.95573 0.92565 0.92531 0.91485 0.90141 0.90887 0.87433 0.86098 0.98673 0.95434 0.92149 0.90779 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 71.98 0.71 -1.31 16 2 C -0.10 -1.64 5.29 30.59 0.16 -1.48 16 3 C -0.09 -2.03 3.12 -9.74 -0.03 -2.06 16 4 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 5 C -0.13 -3.74 5.89 30.59 0.18 -3.56 16 6 C 0.49 21.69 8.02 87.90 0.71 22.40 16 7 O -0.61 -33.66 17.59 -3.06 -0.05 -33.72 16 8 N -0.61 -27.61 2.92 -822.30 -2.40 -30.00 16 9 C 0.26 14.87 5.69 85.63 0.49 15.36 16 10 C -0.55 -32.71 9.39 25.60 0.24 -32.47 16 11 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 12 C 0.01 0.45 5.46 84.65 0.46 0.91 16 13 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 14 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 C 0.10 3.13 6.91 86.83 0.60 3.73 16 19 H 0.06 0.76 7.74 -2.38 -0.02 0.74 16 20 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.08 7.93 -2.39 -0.02 1.06 16 24 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 25 H 0.12 2.80 7.76 -2.39 -0.02 2.79 16 26 H 0.00 -0.31 7.92 -2.39 -0.02 -0.33 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 2.26 7.89 -2.39 -0.02 2.24 16 Total: -1.00 -74.78 256.58 4.47 -70.31 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 1.10 Total: 1.00 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 3.51 Total: 1.52 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.11 Total: -86.47 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.05 Total: -33.72 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.78 4.47 -70.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087232023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.419 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds