Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.45760 * 117.94554 * 119.74367 * 12 2 1 14 14 C 1.53099 * 110.38991 * 160.74655 * 13 12 2 15 15 C 1.53352 * 108.53124 * 51.10865 * 14 13 12 16 16 C 1.53069 * 108.42251 * 292.31607 * 15 14 13 17 17 C 1.33358 * 117.95246 * 300.00161 * 12 2 1 18 18 O 1.21282 * 118.23926 * 2.24276 * 17 12 2 19 19 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 21 21 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.09009 * 109.29455 * 281.23603 * 13 12 2 24 24 H 1.08996 * 109.30409 * 40.60583 * 13 12 2 25 25 H 1.09001 * 109.80227 * 291.32584 * 14 13 12 26 26 H 1.08999 * 109.54863 * 170.74745 * 14 13 12 27 27 H 1.08997 * 109.67721 * 172.57912 * 15 14 13 28 28 H 1.09000 * 109.67165 * 52.04427 * 15 14 13 29 29 H 1.09003 * 109.40069 * 288.76585 * 16 15 14 30 30 H 1.09002 * 109.32754 * 168.98760 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0183 -0.6907 -1.1960 13 6 2.8483 0.0619 -2.1284 14 6 3.6413 -0.8917 -3.0260 15 6 2.6685 -1.9064 -3.6388 16 6 2.1401 -2.8069 -2.5194 17 6 1.6713 -1.9670 -1.3662 18 8 0.9376 -2.4766 -0.5459 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 0.7164 1.1670 3.4843 23 1 2.2122 0.6973 -2.7449 24 1 3.5427 0.6879 -1.5682 25 1 4.3924 -1.4160 -2.4352 26 1 4.1274 -0.3253 -3.8204 27 1 3.1887 -2.5112 -4.3816 28 1 1.8379 -1.3804 -4.1095 29 1 2.9360 -3.4716 -2.1833 30 1 1.3077 -3.4009 -2.8968 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088282642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -40.628556 kcal Electronic energy + Delta-G solvation = -13182.438540 eV Core-core repulsion = 10977.494263 eV Total energy + Delta-G solvation = -2204.944277 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56479 -35.60419 -34.44254 -32.08923 -29.27902 -28.45114 -25.03090 -23.84159 -22.41015 -20.57479 -17.69913 -16.45210 -15.90230 -14.98711 -14.75934 -14.23007 -13.76384 -13.37733 -13.03106 -12.61397 -12.31798 -11.52913 -11.24009 -11.01782 -10.92204 -10.79658 -10.65057 -10.59181 -10.26475 -10.16941 -9.86924 -9.10871 -8.46980 -8.11655 -7.45709 -5.91716 -3.93919 3.36909 3.43258 3.50260 3.70512 4.11477 4.55102 5.03010 5.04632 5.08764 5.32856 5.40558 5.74415 5.77789 5.94525 6.04933 6.11634 6.14848 6.22808 6.44636 6.89752 7.11194 7.28066 7.34861 7.84075 7.99940 8.20026 8.33555 8.78377 9.03988 9.35460 9.69703 11.14267 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048052 B = 0.011727 C = 0.011354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.556586 B = 2387.169484 C = 2465.534548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.265 3.735 3 H 0.040 0.960 4 C -0.494 4.494 5 H 0.056 0.944 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.594 5.594 13 C 0.116 3.884 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.138 4.138 17 C 0.504 3.496 18 O -0.535 6.535 19 H 0.058 0.942 20 H 0.087 0.913 21 H 0.000 1.000 22 H 0.260 0.740 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -1.893 -11.045 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.533 4.533 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.326 5.326 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.178 4.178 17 C 0.291 3.709 18 O -0.412 6.412 19 H 0.077 0.923 20 H 0.105 0.895 21 H 0.019 0.981 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.084 -2.045 -10.476 11.429 hybrid contribution 0.404 -0.348 0.790 0.953 sum 4.488 -2.394 -9.687 10.941 Atomic orbital electron populations 1.22162 0.98012 1.01672 0.99553 1.18854 0.91750 0.91938 0.80942 0.94255 1.21243 1.30298 1.11692 0.90051 0.92622 1.24847 0.95368 0.95165 0.98837 1.69881 1.37392 1.23228 1.23345 0.86500 0.78251 0.80193 0.82506 1.20931 1.21255 1.19958 1.47710 1.49658 1.11030 1.24237 1.21275 0.93670 0.94176 0.91719 1.21902 0.98250 0.97927 0.99171 1.21617 0.99206 0.97570 0.97370 1.21703 1.02435 0.98614 0.95028 1.19699 0.81910 0.82442 0.86893 1.90677 1.36389 1.70176 1.43979 0.92329 0.89471 0.98066 0.93059 0.92983 0.91128 0.91164 0.90759 0.91539 0.91559 0.89401 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.86 37.16 0.33 -3.81 16 2 C 0.27 6.97 2.59 -69.09 -0.18 6.79 16 3 H 0.04 1.06 7.79 -51.93 -0.40 0.66 16 4 C -0.49 -14.38 7.42 -34.44 -0.26 -14.64 16 5 H 0.06 1.68 7.42 -52.49 -0.39 1.29 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 7 N -0.90 -26.46 11.33 55.43 0.63 -25.83 16 8 Si 0.90 22.66 29.54 -169.99 -5.02 17.64 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 12 N -0.59 -12.97 2.78 -168.59 -0.47 -13.44 16 13 C 0.12 1.91 6.26 -4.39 -0.03 1.88 16 14 C -0.13 -1.72 6.03 -26.50 -0.16 -1.88 16 15 C -0.12 -1.49 6.03 -26.51 -0.16 -1.65 16 16 C -0.14 -2.17 6.03 -28.10 -0.17 -2.34 16 17 C 0.50 11.08 6.72 -11.87 -0.08 11.00 16 18 O -0.53 -14.30 13.40 5.56 0.07 -14.22 16 19 H 0.06 1.65 5.84 -51.93 -0.30 1.34 16 20 H 0.09 2.49 6.08 -51.93 -0.32 2.17 16 21 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 24 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 25 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 242.19 15.07 3.65 3.65 Total: -1.00 -32.60 242.19 -6.28 -38.88 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -4.34 Total: -3.63 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.80 Total: -3.05 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.16 Total: -39.27 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.60 -6.28 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088282642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.746 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds