Wall clock time and date at job start Mon Mar 30 2020 02:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.45760 * 117.94554 * 119.74367 * 12 2 1 14 14 C 1.53099 * 110.38991 * 160.74655 * 13 12 2 15 15 C 1.53352 * 108.53124 * 51.10865 * 14 13 12 16 16 C 1.53069 * 108.42251 * 292.31607 * 15 14 13 17 17 C 1.33358 * 117.95246 * 300.00161 * 12 2 1 18 18 O 1.21282 * 118.23926 * 2.24276 * 17 12 2 19 19 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 21 21 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.09009 * 109.29455 * 281.23603 * 13 12 2 24 24 H 1.08996 * 109.30409 * 40.60583 * 13 12 2 25 25 H 1.09001 * 109.80227 * 291.32584 * 14 13 12 26 26 H 1.08999 * 109.54863 * 170.74745 * 14 13 12 27 27 H 1.08997 * 109.67721 * 172.57912 * 15 14 13 28 28 H 1.09000 * 109.67165 * 52.04427 * 15 14 13 29 29 H 1.09003 * 109.40069 * 288.76585 * 16 15 14 30 30 H 1.09002 * 109.32754 * 168.98760 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0183 -0.6907 -1.1960 13 6 2.8483 0.0619 -2.1284 14 6 3.6413 -0.8917 -3.0260 15 6 2.6685 -1.9064 -3.6388 16 6 2.1401 -2.8069 -2.5194 17 6 1.6713 -1.9670 -1.3662 18 8 0.9376 -2.4766 -0.5459 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 0.7164 1.1670 3.4843 23 1 2.2122 0.6973 -2.7449 24 1 3.5427 0.6879 -1.5682 25 1 4.3924 -1.4160 -2.4352 26 1 4.1274 -0.3253 -3.8204 27 1 3.1887 -2.5112 -4.3816 28 1 1.8379 -1.3804 -4.1095 29 1 2.9360 -3.4716 -2.1833 30 1 1.3077 -3.4009 -2.8968 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088282642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:18 Heat of formation + Delta-G solvation = -62.350447 kcal Electronic energy + Delta-G solvation = -13183.380471 eV Core-core repulsion = 10977.494263 eV Total energy + Delta-G solvation = -2205.886208 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.20198 -37.15096 -36.27793 -33.99109 -30.90567 -30.11165 -27.27535 -25.15937 -24.04825 -22.20524 -19.21485 -18.52401 -17.54308 -16.81898 -16.37248 -16.02990 -15.02491 -14.80347 -14.57855 -14.39489 -14.00686 -13.45763 -13.06034 -12.78494 -12.72115 -12.58876 -12.24733 -12.17741 -11.84283 -11.74017 -11.67556 -11.15128 -10.58315 -10.02284 -9.26317 -8.12777 -6.22567 1.34311 1.37655 1.48115 2.03122 2.37861 2.57163 3.14189 3.87124 3.99341 4.00743 4.07745 4.57272 4.63071 4.75388 4.84720 4.91131 4.97877 5.01645 5.11342 5.16361 5.18487 5.35923 5.43379 5.61836 5.86849 6.08442 6.22031 6.76525 7.06588 7.39630 7.70755 8.91366 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048052 B = 0.011727 C = 0.011354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.556586 B = 2387.169484 C = 2465.534548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.266 3.734 3 H 0.028 0.972 4 C -0.510 4.510 5 H 0.035 0.965 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.283 1.283 12 N -0.598 5.598 13 C 0.103 3.897 14 C -0.126 4.126 15 C -0.112 4.112 16 C -0.128 4.128 17 C 0.489 3.511 18 O -0.596 6.596 19 H 0.037 0.963 20 H 0.063 0.937 21 H 0.021 0.979 22 H 0.263 0.737 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -2.178 -12.724 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.329 5.329 13 C -0.019 4.019 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.168 4.168 17 C 0.278 3.722 18 O -0.478 6.478 19 H 0.056 0.944 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.479 -2.305 -12.198 13.569 hybrid contribution -0.033 -0.228 1.288 1.309 sum 5.447 -2.532 -10.910 12.454 Atomic orbital electron populations 1.21956 0.98617 1.00091 0.99353 1.18547 0.91315 0.91431 0.82346 0.95428 1.21397 1.30504 1.11239 0.91794 0.94631 1.25597 0.95617 0.95927 1.01563 1.69975 1.37827 1.24021 1.24098 0.85584 0.78536 0.78454 0.79197 1.19164 1.20433 1.20899 1.47745 1.49990 1.11469 1.23707 1.21651 0.93698 0.95032 0.91522 1.21913 0.97660 0.97527 0.99262 1.21643 0.99496 0.97217 0.96550 1.21696 1.03207 0.98295 0.93630 1.20897 0.80836 0.82501 0.87923 1.90640 1.39147 1.71369 1.46630 0.94434 0.91837 0.95963 0.92788 0.91299 0.91675 0.91661 0.86772 0.87595 0.91074 0.88188 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.73 8.86 71.98 0.64 -7.09 16 2 C 0.27 14.26 2.59 44.25 0.11 14.38 16 3 H 0.03 1.53 7.79 -2.39 -0.02 1.51 16 4 C -0.51 -30.50 7.42 25.60 0.19 -30.31 16 5 H 0.04 2.21 7.42 -2.91 -0.02 2.19 16 6 C 0.01 0.65 5.31 84.66 0.45 1.10 16 7 N -0.92 -54.99 11.33 21.45 0.24 -54.75 16 8 Si 0.96 47.06 29.54 68.60 2.03 49.09 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 12 N -0.60 -26.01 2.78 -806.47 -2.24 -28.25 16 13 C 0.10 3.21 6.26 86.55 0.54 3.75 16 14 C -0.13 -2.72 6.03 30.75 0.19 -2.53 16 15 C -0.11 -2.27 6.03 30.74 0.19 -2.08 16 16 C -0.13 -3.74 6.03 29.70 0.18 -3.56 16 17 C 0.49 21.45 6.72 87.71 0.59 22.04 16 18 O -0.60 -32.80 13.40 -3.04 -0.04 -32.84 16 19 H 0.04 2.18 5.84 -2.39 -0.01 2.16 16 20 H 0.06 3.73 6.08 -2.39 -0.01 3.72 16 21 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 23 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 25 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 26 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -73.07 242.19 4.17 -68.90 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.11 Total: 2.18 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.07 Total: -4.32 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.00 Total: -83.00 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.04 Total: -32.84 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -73.07 4.17 -68.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088282642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.548 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds