Wall clock time and date at job start Mon Mar 30 2020 02:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.45746 * 117.94951 * 240.00305 * 12 2 1 14 14 C 1.52923 * 110.48413 * 160.92534 * 13 12 2 15 15 C 1.53345 * 108.67655 * 50.75734 * 14 13 12 16 16 C 1.53072 * 108.42390 * 292.46789 * 15 14 13 17 17 C 1.33355 * 117.94190 * 59.74422 * 12 2 1 18 18 O 1.21285 * 118.24635 * 2.22075 * 17 12 2 19 19 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 20 20 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 22 22 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 23 23 H 1.08999 * 109.30359 * 281.23420 * 13 12 2 24 24 H 1.08996 * 109.30424 * 40.61557 * 13 12 2 25 25 H 1.09006 * 109.60154 * 170.50502 * 14 13 12 26 26 H 1.08996 * 109.60389 * 290.99639 * 14 13 12 27 27 H 1.09003 * 109.67746 * 52.19663 * 15 14 13 28 28 H 1.09002 * 109.67761 * 172.73508 * 15 14 13 29 29 H 1.08995 * 109.40454 * 169.02585 * 16 15 14 30 30 H 1.09005 * 109.40005 * 288.85923 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.8530 0.0605 2.1255 14 6 2.8768 -0.6212 3.4942 15 6 3.2233 -2.1022 3.2992 16 6 2.0610 -2.7788 2.5682 17 6 1.6671 -1.9653 1.3690 18 8 0.9975 -2.4978 0.5093 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 0.7087 1.1613 -3.4844 23 1 3.8684 0.1166 1.7334 24 1 2.4551 1.0695 2.2325 25 1 3.6305 -0.1493 4.1247 26 1 1.8970 -0.5335 3.9635 27 1 4.1324 -2.1913 2.7045 28 1 3.3714 -2.5754 4.2700 29 1 2.3652 -3.7754 2.2486 30 1 1.2075 -2.8591 3.2414 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088282643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:21 Heat of formation + Delta-G solvation = -40.651995 kcal Electronic energy + Delta-G solvation = -13181.514110 eV Core-core repulsion = 10976.568817 eV Total energy + Delta-G solvation = -2204.945293 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56720 -35.60888 -34.44300 -32.08099 -29.28762 -28.45825 -25.03136 -23.84809 -22.44806 -20.46838 -17.85514 -16.33578 -15.90071 -14.96566 -14.72465 -14.26488 -13.78331 -13.43236 -13.04915 -12.58723 -12.29525 -11.43403 -11.28854 -11.07975 -10.87395 -10.76816 -10.66965 -10.56716 -10.30040 -10.21057 -9.87440 -9.08137 -8.47292 -8.13117 -7.45061 -5.90440 -3.92061 3.40377 3.43689 3.49432 3.70122 4.11293 4.56378 5.01952 5.04473 5.08381 5.33257 5.41658 5.74382 5.77191 5.93635 6.03937 6.10794 6.17289 6.20462 6.45238 6.87894 7.09155 7.26487 7.33914 7.84519 7.97871 8.20200 8.34540 8.77879 9.05670 9.35653 9.71114 11.15662 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048583 B = 0.011800 C = 0.011193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.193398 B = 2372.252394 C = 2501.007744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.265 3.735 3 H 0.040 0.960 4 C -0.492 4.492 5 H 0.056 0.944 6 C 0.058 3.942 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.116 3.884 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.137 4.137 17 C 0.503 3.497 18 O -0.534 6.534 19 H 0.088 0.912 20 H 0.054 0.946 21 H 0.001 0.999 22 H 0.260 0.740 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -1.738 11.292 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.058 0.942 4 C -0.531 4.531 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.177 4.177 17 C 0.289 3.711 18 O -0.411 6.411 19 H 0.107 0.893 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.731 -1.899 10.699 11.489 hybrid contribution 0.363 -0.362 -0.761 0.918 sum 4.094 -2.261 9.938 10.983 Atomic orbital electron populations 1.22139 0.98096 1.01419 0.99674 1.18847 0.91602 0.91967 0.81057 0.94224 1.21202 1.30209 1.11694 0.89982 0.92580 1.24844 0.95408 0.95169 0.98829 1.69867 1.37440 1.23279 1.23424 0.86557 0.78828 0.79972 0.82037 1.21404 1.20526 1.20264 1.47708 1.49622 1.11158 1.24150 1.21234 0.95429 0.95465 0.88715 1.21876 1.02209 0.96023 0.97128 1.21611 0.98458 0.95440 1.00272 1.21698 0.99327 0.99978 0.96738 1.19711 0.81380 0.82338 0.87668 1.90698 1.38961 1.68843 1.42585 0.89315 0.92687 0.98020 0.93028 0.92504 0.91544 0.90689 0.91456 0.91351 0.91553 0.89283 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.86 37.16 0.33 -3.77 16 2 C 0.27 6.97 2.60 -69.09 -0.18 6.79 16 3 H 0.04 1.07 7.79 -51.93 -0.40 0.67 16 4 C -0.49 -14.38 7.37 -34.44 -0.25 -14.63 16 5 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -26.54 11.32 55.43 0.63 -25.91 16 8 Si 0.90 22.77 29.54 -169.99 -5.02 17.75 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.59 -12.96 2.78 -168.71 -0.47 -13.43 16 13 C 0.12 1.91 6.25 -4.49 -0.03 1.88 16 14 C -0.13 -1.68 6.02 -26.59 -0.16 -1.84 16 15 C -0.12 -1.51 6.04 -26.52 -0.16 -1.67 16 16 C -0.14 -2.16 6.03 -28.11 -0.17 -2.33 16 17 C 0.50 11.04 6.74 -11.88 -0.08 10.96 16 18 O -0.53 -14.29 13.38 5.55 0.07 -14.22 16 19 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 20 H 0.05 1.54 5.98 -51.93 -0.31 1.23 16 21 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 242.16 15.07 3.65 3.65 Total: -1.00 -32.67 242.16 -6.28 -38.95 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.35 Total: -3.76 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.80 Total: -3.03 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.16 Total: -39.34 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.67 -6.28 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088282643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.701 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds