Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46824 * 110.99680 * 59.68779 * 12 2 1 14 14 C 1.53306 * 109.39701 * 170.24579 * 13 12 2 15 15 C 1.51438 * 108.24134 * 53.79582 * 14 13 12 16 16 O 1.20759 * 121.10942 * 130.99202 * 15 14 13 17 17 C 1.51438 * 117.77445 * 310.96931 * 15 14 13 18 18 C 1.46822 * 110.99826 * 295.00288 * 12 2 1 19 19 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 21 21 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 22 22 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.48435 * 290.22270 * 13 12 2 24 24 H 1.09002 * 109.48347 * 50.27223 * 13 12 2 25 25 H 1.08994 * 109.71113 * 294.10526 * 14 13 12 26 26 H 1.09002 * 109.74358 * 173.49664 * 14 13 12 27 27 H 1.08999 * 109.70843 * 289.34166 * 17 15 14 28 28 H 1.09001 * 109.70603 * 168.71372 * 17 15 14 29 29 H 1.09000 * 109.48228 * 309.72721 * 18 12 2 30 30 H 1.08994 * 109.48802 * 69.75937 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 1.5428 -2.0806 1.2371 14 6 2.2634 -2.8363 2.3596 15 6 2.0831 -2.0584 3.6464 16 8 1.7179 -2.6045 4.6596 17 6 2.3766 -0.5730 3.6201 18 6 1.6489 0.0388 2.4174 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 0.7081 1.1608 -3.4844 23 1 0.4688 -2.0912 1.4229 24 1 1.7516 -2.5628 0.2821 25 1 3.3247 -2.9182 2.1252 26 1 1.8330 -3.8318 2.4686 27 1 3.4501 -0.4121 3.5209 28 1 2.0185 -0.1112 4.5402 29 1 1.9341 1.0857 2.3139 30 1 0.5719 -0.0312 2.5699 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095831162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = -39.307354 kcal Electronic energy + Delta-G solvation = -12931.176416 eV Core-core repulsion = 10726.289431 eV Total energy + Delta-G solvation = -2204.886985 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.52995 -37.29886 -33.45585 -31.11586 -30.86127 -27.52667 -25.34169 -23.15380 -22.66124 -20.06867 -18.30522 -16.28072 -15.76440 -15.06965 -14.70926 -14.48481 -14.32787 -13.89138 -13.10560 -12.76831 -12.03783 -11.79816 -11.54356 -11.29813 -11.19684 -10.98658 -10.75892 -10.67224 -10.41052 -10.09235 -9.80138 -9.09783 -8.90208 -8.44786 -7.30074 -6.06952 -4.11347 2.22101 3.26654 3.35101 3.38678 4.34875 4.43462 4.82206 5.17394 5.25287 5.38965 5.45138 5.63066 5.79899 5.92739 6.14712 6.19378 6.29098 6.45653 6.53995 6.72961 6.79757 7.04695 7.39961 7.61844 7.72299 7.79004 8.02186 8.29078 8.49461 8.94347 9.54230 11.00122 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058678 B = 0.009868 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.067580 B = 2836.882579 C = 3095.725502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.535 5.535 13 C 0.067 3.933 14 C -0.167 4.167 15 C 0.366 3.634 16 O -0.478 6.478 17 C -0.164 4.164 18 C 0.059 3.941 19 H 0.029 0.971 20 H 0.008 0.992 21 H 0.089 0.911 22 H 0.260 0.740 23 H 0.028 0.972 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -2.652 6.516 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.259 5.259 13 C -0.062 4.062 14 C -0.205 4.205 15 C 0.243 3.757 16 O -0.354 6.354 17 C -0.203 4.203 18 C -0.070 4.070 19 H 0.048 0.952 20 H 0.027 0.973 21 H 0.108 0.892 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.892 -2.828 6.874 7.670 hybrid contribution -0.609 -0.277 -0.935 1.150 sum 1.283 -3.105 5.939 6.823 Atomic orbital electron populations 1.22424 1.00739 0.99410 1.00702 1.19321 0.89810 0.94669 0.85611 0.93926 1.21146 1.30763 1.12610 0.89614 0.91724 1.24935 0.95153 0.95101 0.99072 1.69892 1.36883 1.23026 1.23409 0.86464 0.78536 0.79668 0.82879 1.19699 1.21184 1.21049 1.62148 1.60015 1.01301 1.02449 1.21958 0.95585 0.90477 0.98172 1.22466 1.04027 0.99322 0.94693 1.25105 0.70249 0.91728 0.88610 1.90347 1.35638 1.73660 1.35713 1.22403 1.03672 0.94157 1.00022 1.21970 0.96722 0.98594 0.89708 0.95181 0.97276 0.89221 0.92984 0.95381 0.88357 0.87930 0.89996 0.87897 0.90014 0.90283 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.30 37.15 0.31 -3.72 16 2 C 0.21 5.03 2.34 -68.86 -0.16 4.87 16 3 H 0.04 1.11 8.04 -51.93 -0.42 0.70 16 4 C -0.50 -13.03 7.80 -34.44 -0.27 -13.29 16 5 H 0.06 1.66 6.76 -52.48 -0.35 1.31 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -10.66 4.55 -227.77 -1.04 -11.69 16 13 C 0.07 1.22 4.60 -3.71 -0.02 1.21 16 14 C -0.17 -2.57 6.35 -27.36 -0.17 -2.75 16 15 C 0.37 5.93 6.80 -28.31 -0.19 5.73 16 16 O -0.48 -8.88 17.91 6.00 0.11 -8.77 16 17 C -0.16 -2.40 6.35 -27.36 -0.17 -2.57 16 18 C 0.06 1.01 4.95 -3.71 -0.02 0.99 16 19 H 0.03 0.67 6.63 -51.93 -0.34 0.33 16 20 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 21 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.03 0.53 6.82 -51.93 -0.35 0.17 16 24 H 0.10 1.93 6.23 -51.93 -0.32 1.61 16 25 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 30 H 0.03 0.53 6.90 -51.93 -0.36 0.18 16 LS Contribution 240.51 15.07 3.62 3.62 Total: -1.00 -27.92 240.51 -6.55 -34.47 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.06 Total: -1.17 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.79 Total: -8.07 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.41 Total: -35.67 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.11 Total: -8.77 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.92 -6.55 -34.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095831162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.838 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds